XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AAATTTTACACTTGAAGTATTAGAAATTATAGGAGTGTGAAAGAAATATG
CTTTGTAGAATATATCCTTTTGTAGCAAAAAAGGGGAGAAAATAGTATTA
AATAATTATTTGATTAAGAGGTAAATAGTAAATATTTGTCAATCTTTTAC
AACACCAAATTACATGTAGTGATGAGGTAAATTTTACTCTAGTTCAACAC
TGAGTGCAATTTCCTCCATATGTTTTACCAACATTTATATTAACAGCTTT
GAGTATAAAAGTGACCTTTCTCAAATTGCCACAAATGACTTCTACAGCAA
ATGTTATCATTTTAATGGTGACCTTAAATATTTACCTAATTGCCAGAAAT
GACTCTGAAATCATCTCCTCTCATATTTCAATGTAGGAGAATCACTAGAT
TATGAACAACCCCCTCCAAAAATATGACTCAAAAGGAGAAACATCCAGTA
ATTAAAAGGAATAGATGCTAGTTGTATTTTCTGATTGACTGTAGGAGATG
TGTCTTTGTTAANAAAAAAAAAAAAAAAAANAAANNNNAACCTCAAAATA
ATGAATCACAGAAAACAAGATCAGTGAAAACACCTGAGTGTAACATTTCT
TGCATTTCTCAACAAACTAGGACCAAATTCCTGAGCGCTTAGTACCACAT
AACATGTTTTTCACTCTGACCTTGTTTCCCAGCACCATTCTCTTTATAAA
GGACATATGGTTTTCT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAA
GCACCTGAAAAAATGTTCAATATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAA
AACTCAGGTGACAGCAGATGCTGGGGAGGATGTGGAGAAAGGGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCAGAGGATCCAACA
ACACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGT
ACATTTACTCAATGGAATACTACTCAGCTATTTAAAAAAATGAATTTATG
AAATTCCTAGCTCAATGGATGGGACTGGAGGGTATCCTCCTGAGTGAAGA
AACCTATTCCAAGGGACTCCTTCTAATTGTACTCCCTGAATAGTGTATAA
TATCCCTTAAAACTTACGAAACCCAGAACAAAGAAAACATCTTGCTAATG
CGTGAACATCTCCAACTAAGGAAAAACCACGGGGGTATCCTTCTCCCCTC
CTCAAAAAGGGAAATAACATCCCTCGGACTGATG

Query= MSMg01no355_h05.b1 MSMg01no355_h05.b1 CHROMAT_FILE:
MSMg01no355_h05.b1 PHD_FILE: MSMg01no355_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:54 2005
         (539 letters)



>mm_chr1_110145601_110146539
          Length = 939

 Score =  978 bits (506), Expect = 0.0
 Identities = 527/534 (98%), Gaps = 2/534 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaattt-tacacttgaagtattagaaattataggagtgtgaaagaaatatgct 63
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaattaataaacttgaagtattagaaattataggagtgtgaaagaaatatgct 264

                                                                       
Query: 64  ttgtagaatatatccttttgtagcaaaaaaggggagaaaatagtattaaataattatttg 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtagaatatatccttttgtagcacaaaaggggagaaaatagtattaaataattatttg 324

                                                                       
Query: 124 attaagaggtaaatagtaaatatttgtcaatcttttacaacaccaaattacatgtagtga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaagaggtaaatagtaaatatttgtcaatcttttacaacaccaaattacatgtagtga 384

                                                                       
Query: 184 tgaggtaaattttactctagttcaacactgagtgcaatttcctccatatgttttaccaac 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 tgaggtaaattttactctagttcaacactgagtgcaatttcctccatatgttataccaac 444

                                                                       
Query: 244 atttatattaacagctttgagtataaaagtgacctttctcaaattgccacaaatgacttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttatattaacagctttgagtataaaagtgacctttctcaaattgccacaaatgacttc 504

                                                                       
Query: 304 tacagcaaatgttatcattttaatggtgaccttaaatatttacctaattgccagaaatga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacagcaaatgttatcattttaatggtgaccttaaatatttacctaattgccagaaatga 564

                                                                       
Query: 364 ctctgaaatcatctcctctcatatttcaatgtaggagaatcactagattatgaacaaccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctgaaatcatctcctctcatatttcaatgtaggagaatcactagattatgaacaaccc 624

                                                                       
Query: 424 cctccaaaaatatgactcaaaaggagaaacatccagtaattaaaaggaatagatgctagt 483
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctccaaaaatataactcaaaaggagaaacatccagtaattaaaaggaatagatgctagt 684

                                                                 
Query: 484 tgtattttctgattgactgtaggagatgtgtctttgttaanaaaaaaaaaaaaa 537
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 tgtattttctgattgactgtaggagatgtgtctttgttaa-aaaaaaaaaaaaa 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)