TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAAT
GCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTT
GTTTATATAATGGATTACATTGATGGATTTTCATATATTAAACCATCCCT
GCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATG
TGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGAT
ATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGTATCTTTCT
GTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGA
GTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAATTAG
ATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTG
GGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGT
GATATGGGACTGTTTAGATGGTTCACTTGATCCTGATTCAACTTTGGTAC
CTGGCATCTGTCCAGAAATTTGCCATTTCCTCCAGGTTTTCCAGTTTTGT
TTGACATAGCCCTTTGCACAACGATCTGATGGTGTTTCGCACCTCCTCCC
ATCTGTTGTTTTACTTCCTTTTCCTTTCTCAACTTTTCTCCTATGCTCTT
TTTCCTC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAAAAAAAGCTCATTTTCTGAAGGA
GCTTGTCATTTGTGAAATTTTATTGACCAACTTTCCACGGACTATATTTT
TACTGGCATTCAATGCTTCTTATCGTCCACTAGAATGGGCCACCAGACTG
GTTTTGCACATTCTTATATTCCTCTAACCCACATCTTTTAGTTTTTACAC
ATTCCTTTCACAAAGAATATCCAATATACAAATCATATGATAGAGTTTAA
GGGCATCCACAAATCCAACCATGATACAAACTGTTTTCTGGTCATCACAA
GCAATTTCCTAGTAGAAACAGGTGAAGGGAATTAGCATTCTATTTACCAT
ATTTGGGCAGGTAAATTCATGGCTGTGGGCTCATGTGGCAGTGCTCTGAC
ACTGGGCAGATAGGAAAAAAAGACAACACTAAAGGACTGGTGTGTATACA
CCTTCCAAATGTCTGCTTTAAATGACCTATGTCAATCAACCAGGGCCCAC
CTCCTAAAGGCTCCATATCTTCAAAACAGTGTGACCAGCTGGAGACTGAC
ATTTCTATATGAGTGAGCCTTATAGGAACACCTCAGATTCTAACTCCCAC
TATCTGGCTGATACCAATTCTTCCTATTACCCCCATCAACTTTGTTTATC
TAAGCTTTTCTCTGCGCCAGAAGTGGCCCAAATGGCTTTATCCCACAAGT
TAAGCTCCCTGAAATTGGTGGGGCT

Query= MSMg01no355_l04.g1 MSMg01no355_l04.g1 CHROMAT_FILE:
MSMg01no355_l04.g1 PHD_FILE: MSMg01no355_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:13 2005
         (503 letters)



>mm_chr1_96997379_96998281
          Length = 903

 Score =  957 bits (495), Expect = 0.0
 Identities = 501/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaaaaaagctcattttctgaaggagcttgtcatttgtgaaattttattgaccaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cagaaaaaaagctcattttctgaaggagcttgtcatttgtgaaattttattgaccaactt 644

                                                                       
Query: 61  tccacggactatatttttactggcattcaatgcttcttatcgtccactagaatgggccac 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 643 tccacggactatatttttactggcattcaatgcttcttattgtccactagaatgggccac 584

                                                                       
Query: 121 cagactggttttgcacattcttatattcctctaacccacatcttttagtttttacacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagactggttttgcacattcttatattcctctaacccacatcttttagtttttacacatt 524

                                                                       
Query: 181 cctttcacaaagaatatccaatatacaaatcatatgatagagtttaagggcatccacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctttcacaaagaatatccaatatacaaatcatatgatagagtttaagggcatccacaaa 464

                                                                       
Query: 241 tccaaccatgatacaaactgttttctggtcatcacaagcaatttcctagtagaaacaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tccaaccatgatacaaactgttttctggtcatcacaagcaatttcctagtagaaacaggt 404

                                                                       
Query: 301 gaagggaattagcattctatttaccatatttgggcaggtaaattcatggctgtgggctca 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaagggaattaacattctatttaccatatttgggcaggtaaattcatggctgtgggctca 344

                                                                       
Query: 361 tgtggcagtgctctgacactgggcagataggaaaaaaagacaacactaaaggactggtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgtggcagtgctctgacactgggcagataggaaaaaaagacaacactaaaggactggtgt 284

                                                                       
Query: 421 gtatacaccttccaaatgtctgctttaaatgacctatgtcaatcaaccagggcccacctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtatacaccttccaaatgtctgctttaaatgacctatgtcaatcaaccagggcccacctc 224

                                  
Query: 481 ctaaaggctccatatcttcaaaa 503
           |||||||||||||||||||||||
Sbjct: 223 ctaaaggctccatatcttcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)