BAC Information

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BAC

Clone NameMSMg01-355L16
Chromosome1 (Build37)
Map Location 27,534,205 - 27,718,699
singlet/doubletdoublet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L16.T7 (MSMg01no355_l16.b1)MSMg01-355L16.TJ (MSMg01no355_l16.g1)
ACCAG466047AG466048
length751764
length of high quality
(start - end)		591 (47 - 637)531 (77 - 607)
definitionCHROMAT_FILE: MSMg01no355_l16.b1 PHD_FILE: MSMg01no355_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:15 2005CHROMAT_FILE: MSMg01no355_l16.g1 PHD_FILE: MSMg01no355_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,718,338 - 27,718,699)(27,534,205 - 27,534,735)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAAATTCCTAGGCAAATAGATGAAACAAAAAAATTTCATCCT
AAGTGGGGGGTAACTCAATCACAAAATAACACACATAGTATACACTCACT
GATAAGTGGATATTAGCCAAAAAGCTAAGAAAACCCAAGATACAATTCAC
AGACCACATGAAGCTCAAGAAAAAGGAAGACCAAAGTATGAATACTTTGG
TCCTTCTTAGAAGGGGAAATAAAATACACATGGGAGGATATACAGAGCTA
AAGCATGGAACAGAGACTGAAGGAAAGACCATCCAGTGAGTGCCCAACCT
GGGGACCCATCCCATATACATTCACCAAACCCAGACACTATTGTGGATTC
CAACAAGTGCTTGCTGACAGGTGCCTAATATAGCTGTTTCCCGAGTGGCT
CTGCCAGTGCCTGACATATTCAGAGCCTTGTATATCTAGTAAATCTTAAT
ACTTGAATTATCTCTTAATGATATGACTACATGTATAATTAATATTTATT
AATGGAAAAACTCTACTCCTATGGATATCACTAACTGCTAGTATTAAATG
AATATTCTTGAATGATTAACTTATTAACCACATCCATGTCCTCCACTGGT
CTTCTGTGACAGGGGGTATTTTCTTTGTAAAGGCAGAGGAAAAAAAATCC
TTTCGCTTTATTTCTTTGCCAAAGGCCTTTTATCCGTTACCTGCGAGGAT
C

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTGTGAATGAGGAAATACAAT
CTGCTGTGAAAAACAGTAAGTATAACTGCTGTAGAAAATCTTTGTGATGA
AGTATAAAATAATGTGGGAAATTTCCATGGTTTTGCAACACAAAGATTTT
AACTGAACGAATAAAGATAGAACAGAAAGGCACATGATGTAGAGATTACT
AGGTCCTTAGCTTTCCATGACCCTGAACTTCCTGTAAACCACAGGCTTCA
GGATAAATTATTTTGTAGTCTCTATTTAATGAAGGTGAAAAGTTATCCCA
AAATTTTTATGGTACAATATCTAAGTAGAAGCTATTTTTTTGTGGACAAT
AAGGCCACTCTTTAATATTAATTTTATTCTCTAATATATATCATCTTTAC
TAATTAGCTATCATTAACAGGATATTTCATATTTGTCTGAAGAGAAATAG
GTTCAAGGGCAGAGAGTTGCTTATTTATCTCTGCTTCCTGGNAGCTCACT
CATTCTCTGACATTCAAGAGTGATTAGTATATTAAAGTGGAATGAAACCT
TTTGTGGTATGTCTTTCACAAGCATTAATAATATCACTCTCTACATTAAT
AGAATTATGTGCTGATATGATTGATATTANAGATCCCCGATCCCTTTTCT
TAGGACAGCTAAACTTTTTAGATGCTTTAACTCCCCCCTTGACCAAGTCC
GAAAATCCCCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l16.b1 MSMg01no355_l16.b1 CHROMAT_FILE:
MSMg01no355_l16.b1 PHD_FILE: MSMg01no355_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:15 2005
         (591 letters)



>mm_chr1_27717709_27718699
          Length = 991

 Score =  646 bits (334), Expect = 0.0
 Identities = 355/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 230 acacatgggaggatatacagagctaaagcatggaacagagactgaaggaaagaccatcca 289
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 acacatgggaggatatagagagctaaagcatggaacagagactgaaggaaagaccatcca 932

                                                                       
Query: 290 gtgagtgcccaacctggggacccatcccatatacattcaccaaacccagacactattgtg 349
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gtgactgcccaacctggggatccatcccatatacattcaccaaacccagacactattgtg 872

                                                                       
Query: 350 gattccaacaagtgcttgctgacaggtgcctaatatagctgtttcccgagtggctctgcc 409
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 871 gattccaacaagtgcttgctgacaggtgcctaatatagctgtctcctgagtggctctgcc 812

                                                                       
Query: 410 agtgcctgacatattcagagccttgtatatctagtaaatcttaatacttgaattatctct 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 agtgcctgacatattcagagccttgtatatctagtaaatcttaatacttgaattatctct 752

                                                                       
Query: 470 taatgatatgactacatgtataattaatatttattaatggaaaaactctactcctatgga 529
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 751 taatgatatgactacatgtataattaatatttattaatgtaaaaactctactcctatgta 692

                                                                       
Query: 530 tatcactaactgctagtattaaatgaatattcttgaatgattaacttattaaccacatcc 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tatcactaactgctagtattaaatgaatattcttgaatgattaacttattaaccacatcc 632

             
Query: 590 at 591
           ||
Sbjct: 631 at 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_l16.g1 MSMg01no355_l16.g1 CHROMAT_FILE:
MSMg01no355_l16.g1 PHD_FILE: MSMg01no355_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:15 2005
         (531 letters)



>mm_chr1_27534005_27534935
          Length = 931

 Score =  998 bits (516), Expect = 0.0
 Identities = 527/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattgtgaatgaggaaatacaatctgctgtgaaaaacagtaagtataactgctgtagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattgtgaatgaggaaatacaatctgctgtgaaaaacagtaagtataactgctgtagaa 260

                                                                       
Query: 61  aatctttgtgatgaagtataaaataatgtgggaaatttccatggttttgcaacacaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctttgtgatgaagtataaaataatgtgggaaatttccatggttttgcaacacaaaga 320

                                                                       
Query: 121 ttttaactgaacgaataaagatagaacagaaaggcacatgatgtagagattactaggtcc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaactgaacgaatagagatagaacagaaaggcacatgatgtagagattactaggtcc 380

                                                                       
Query: 181 ttagctttccatgaccctgaacttcctgtaaaccacaggcttcaggataaattattttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagctttccatgaccctgaacttcctgtaaaccacaggcttcaggataaattattttgt 440

                                                                       
Query: 241 agtctctatttaatgaaggtgaaaagttatcccaaaatttttatggtacaatatctaagt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 agtctctatttaatgaaggtgaaaagttatcccaaattttttatggtacaatatctaagt 500

                                                                       
Query: 301 agaagctatttttttgtggacaataaggccactctttaatattaattttattctctaata 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagctatttttatgtggacaataaggccactctttaatattaattttattctctaata 560

                                                                       
Query: 361 tatatcatctttactaattagctatcattaacaggatatttcatatttgtctgaagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatcatctttactaattagctatcattaacaggatatttcatatttgtctgaagagaa 620

                                                                       
Query: 421 ataggttcaagggcagagagttgcttatttatctctgcttcctggnagctcactcattct 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ataggttcaagggcagagagttgcttatttatctctgcttcctggtagctcactcattct 680

                                                              
Query: 481 ctgacattcaagagtgattagtatattaaagtggaatgaaaccttttgtgg 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgacattcaagagtgattagtatattaaagtggaatgaaaccttttgtgg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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