TTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGCTTTGCCTCTTTTGTTTCAATGTTATCACATGTTTGTGG
TCAAGAACATGGCTGTTCTCAGGTGATAACAGGATATATGTTGTCCTTTC
TCACCCTTCCCTTCTTTTCACATCTTCAAGGGAAGTCTTTTCCCTGTTTC
TTCTCATCCTTTGCCCTGGTTTCTGCCTTACCAATGCCCCTTTTCCCCAT
TTCTTTTCTTTTTGGTACATGTGTGCTTATGCATGTGCACAGTGTTTGTG
TGTGTGCTGGTGCATACAGAAGCTAGGGGACCTCATGGGGCATCCTTCCT
TGGGCACAGGTCCACTTCTTTCTTCAGAAACCCTCCTGTCTCCCCTTCTC
TAGTACTGAGATTATAAGCACCTACTTCCATACCCAGTTTTTTCAAGGGT
TCTGGGTTTTGTATGCTGGTCCTCATTTATAGAAGACAAACTCTGTACTG
ACTGAGCCCTCATTTTGAAAGAAAAATTCACTCATGATGAAGCCTATTCT
TTCTGACTCATTAGCTGCTGGATGGCAGGGCAGGGCAAACTCTCCCTGTT
TACAGAGCTGATAGCATCAACTCCCCCTGGTCAGACTGCTTGCTACACAA
GTCCCCTGGGTCATTATTCACATGGGGCCTCTTCCCTAATTCATGCCGCA
ATCTACACGACAAACTATTCCTACTCATCTCTTTTC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGCTTTGTTTTCCA
TTTTTAATAGGGCTATTTGGGTCTCTGGAATCTAACTTCTTAAGTTCGTT
GTATATATTGGATATTAGCCCTCTATTGGATGTAGTATTGGTAAAGATCT
TTTCCAATCTGTTCGTTGCCATTTTTGTCCCATTGACAGTGTCCTTTGCC
TTATAGTTTTGCAATTTTATGATGTGCCATTTGTCAATTCTTGATCTTAG
ATCATAAGACATTGGTGTTCTGTTGAGGATTTTTTCCCCCTGTGCCCATG
TTTTGGAGGTTTTCCCCACTTTCTCTTCTATTAGATTCAATGTATCTGTT
TTTTATGTGGAGGTCCTTGATCTACTTAGATGTCACAGTCCTTGCCACCC
ACTGGGACAAGAACGACATGGACACCAAGGCGGGTTCACACAGCAGCTTC
TTTACTTCTAGCTTTTTCACTTCCAGCTCTCTCCCTCAGCAGTTTCTTCT
CTGCCTCCTCTTGTAGCAAGCTCTATACTCCTTAACTGGTGGGGCCTACC
TCTTTCTCGTTCCCCCCCACCTCATCCAACCAAAATCAAAAATTCTCCAG
GGACAAGCTCTGGTCATTCTCCAGGCTGACAGAACCGGAATCACACTGAA
AATGGCGTGGGGTTTTTCTCGGTCCATGCTTAGGGCAAGAGGATAAACAA
AAGTGAGGGCCCCCAGGC

Query= MSMg01no355_l21.b1 MSMg01no355_l21.b1 CHROMAT_FILE:
MSMg01no355_l21.b1 PHD_FILE: MSMg01no355_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:16 2005
         (557 letters)



>mm_chr1_125208202_125209159
          Length = 958

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattc-catgctttgcctcttttgtttcaatgttatcacatgtttgtggtcaagaaca 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcacatgctttgcctcttttgtttcaatgttatcacatgtttgtggtcaagaaca 466

                                                                       
Query: 63  tggctgttctcaggtgataacaggatatatgttgtcctttctcacccttcccttcttttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tggctgttctcaggtgataacaggatatatgttgtcctttctcacccttcccttcttttc 406

                                                                       
Query: 123 acatcttcaagggaagtcttttccctgtttcttctcatcctttgccctggtttctgcctt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acatcttcaagggaagtcttttccctgtttcttctcatcctttgccctggtttctgcctt 346

                                                                       
Query: 183 accaatgccccttttccccatttcttttctttttggtacatgtgtgcttatgcatgtgca 242
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gccaatgccccttttccccatttcttttctttttggtacatgtgtgcttatgcatgtgca 286

                                                                       
Query: 243 cagtgtttgtgtgtgtgctggtgcatacagaagctaggggacctcatggggcatccttcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagtgtttgtgtgtgtgctggtgcatacagaagctaggggacctcatggggcatccttcc 226

                                                                       
Query: 303 ttgggcacaggtccacttctttcttcagaaaccctcctgtctccccttctctagtactga 362
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcaggcacaggtccacttctttcttcagaaaccctcctgtctccccttctctagtactga 166

                                                                       
Query: 363 gattataagcacctacttccatacccagttttttcaagggttctgggttttgtatgctgg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gattataagcacctacttccatacccagttttttcaagggttctgggttttgtatgctgg 106

                                                                       
Query: 423 tcctcatttatagaagacaaactctgtactgactgagccctcattttgaaagaaaaattc 482
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tcctcgtgtatagaagacaaactctgtactgactgagccctcattttgaaagaaaaattc 46

                                                        
Query: 483 actcatgatgaagcctattctttctgactcattagctgctggatg 527
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  actcatgatgaagcctattctttctgactcattagctgctggatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)