Query= MSMg01no355_m05.b1 MSMg01no355_m05.b1 CHROMAT_FILE:
MSMg01no355_m05.b1 PHD_FILE: MSMg01no355_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:18 2005
(244 letters)
>mm_chr1_52111031_52111674
Length = 644
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%)
Strand = Plus / Minus
Query: 1 aagtgctcgaaatagatccaaaaattatctttgttttgtttctgtaactcttccaattgt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtgcttgaaatagatccaaaaattatctttgttttgtttctgtaactcttccaattgt 385
Query: 61 ctgttgccaaccaggttcccagataagtgagccacagtagagatgcagtacactgttaga 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgttgccatccaggttcccagataagtgagccacagtagagatgcagtacactgttaga 325
Query: 121 ctagggttcagatggaccctggtgttgaactgctcttaagaatatggccctaagttcact 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagggttcagatggaccctggtgctgaactgctcttaagaatatggccctaagttcact 265
Query: 181 gtttgcatagattgtttatgttctcataagggcgaattgtggggattcacaaaaactagc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 gtttgcatagattgtttatgttctcataagggcgaattgtggggattcaccaaaactagc 205
Query: 241 taaa 244
||||
Sbjct: 204 taaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no355_m05.g1 MSMg01no355_m05.g1 CHROMAT_FILE:
MSMg01no355_m05.g1 PHD_FILE: MSMg01no355_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:18 2005
(339 letters)
>mm_chr1_51929225_51929962
Length = 738
Score = 586 bits (303), Expect = e-172
Identities = 330/339 (97%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 1 agcatccataatctggttatccagtgggaggtttctgcccaagagaggagtactgccgtg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agcatccataatctggttatccagtgggaggtttctgcccaagagaggagtacttccgtg 260
Query: 61 tacaaaggttgaaggtataatccggagctcctgggcttagagttgttgactgtatagtct 120
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgcaaaggttgaaggtataatccagagctcctgggcttagagttgttgactgtatagact 320
Query: 121 agggagacagctgattcctgactcctcatctgaatacatttctacagactaatatggcca 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 agggagacagctgattcctgactcctcatctgaatacatttctactgactaatatggcca 380
Query: 181 tttattgctgtattcctttcttggttcttgtgaccattaagataagaacctgtgaccacg 240
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgttgctttattcctttcttggttcttgtgaccattaagataagaacctgtgaccacg 440
Query: 241 tcatgtgtattttactgatagctaagtagaaagctactgaagtgcatattatttgccagc 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgtg-agtttactgatagctaagtagaaagctactgaagtgcatattatttgccagc 499
Query: 301 attctgaagtgcctgtgttgagtttttaaggatctccaa 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attctgaagtgcctgtgttgagtttttaaggatctccaa 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 738
Length adjustment: 9
Effective length of query: 330
Effective length of database: 729
Effective search space: 240570
Effective search space used: 240570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
