Query= MSMg01no356_a15.b1 MSMg01no356_a15.b1 CHROMAT_FILE:
MSMg01no356_a15.b1 PHD_FILE: MSMg01no356_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:39 2005
(706 letters)
>mm_chr1_101793293_101794400
Length = 1108
Score = 1307 bits (676), Expect = 0.0
Identities = 697/704 (99%), Gaps = 2/704 (0%)
Strand = Plus / Minus
Query: 5 gaattctcactgatatctggcttctctgctttcagacaagaactcctaagcatgttgtta 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gaattctcactgaaatctggcttctctgctttcagacaagaactcctaagcatgttgtta 849
Query: 65 atagatgctgtttgtcctccagtacgggcatatttaaggctaactttgatggaaaacagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 atagatgctgtttgtcctccagtacgggcatatttaaggctaactttgatggaaaacagt 789
Query: 125 agcataaagatgcaatttgtgttgagaagccagcagccaacaacatataggaaccacttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agcataaagatgcaatttgtgttgagaagccagcagccaacaacatataggaaccacttt 729
Query: 185 tctcaaggttctctcttttttctgggctctgtttctttttcttattgatcctgattaact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tctcaaggttctctcttttttctgggctctgtttctttttcttattgatcctgattaact 669
Query: 245 gagtaagggaaagcagatgtgaataagcagtgagtgtcctgatatgatctgaacaactgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gagtaagggaaagcagatgtgaataagcagtgagtgtcctgatatgatctgaacaactgg 609
Query: 305 cccctttttgacatcttttacaatcaactctacttaaattgatgatgcgcatgtgcaatt 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cccctttttgacatcttttccaatcaactctacttaaattgatgatgcgcatgtgcaatt 549
Query: 365 gtgtatgtttgtgtataaaagtgtatgtacttagatgtcatgatgtgtgtgatggtcaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgtatgtttgtgtataaaagtgtatgtacttagatgtcatgatgtgtgtgatggtcaga 489
Query: 425 ggtcagtcctaattgtcaagacctaccttccattgtatttgaaaaaagatttaatttcag 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggtcagtcctaattgtcaagccctaccttccattgtatttgaaaaaagatttaatttcag 429
Query: 485 tccagaatggttgccctggagcttccaagaaatctgctggatcagttttgtgtctccctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tccagaatggttgccctggagcttccaagaaatctgctggatcagttttgtgtctccctg 369
Query: 545 taagagtgctaggataacggaggcatcctcccaaggg-tgtttacctcggaatctaatcc 603
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 368 taagagtgctaggataacagaggcatcctcccaaggggtgtttacctcggaatctaatcc 309
Query: 604 taattcttcatgtttatacaacaagtatgtttcccgttaagacatctccttatagtttat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taattcttcatgtttatacaacaagtatgtttcccgttaagacatctccttatagtttat 249
Query: 664 cttctgtttcattatttttatctactttctgcctccaaa-tgta 706
||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 248 cttatgtttcattatttttatctactttctgcctccaaaatgta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1108
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1098
Effective search space: 764208
Effective search space used: 764208
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no356_a15.g1 MSMg01no356_a15.g1 CHROMAT_FILE:
MSMg01no356_a15.g1 PHD_FILE: MSMg01no356_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:39 2005
(566 letters)
>mm_chr1_101667283_101668248
Length = 966
Score = 1087 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Plus
Query: 1 tttccttagtaaaatattggcctcttgttttgttttcattgaactgtctttcagtattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccttagtaaaatattggcctcttgttttgttttcattgaactgtctttcagtattcc 260
Query: 61 actgatggaagctgaaaggttgggatttatgcaaaggctgcttaaagctcagtccagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgatggaagctgaaaggttgggatttatgcaaaggctgcttaaagctcagtccagtgt 320
Query: 121 ggaatagctgcagagctggcagctgaaaccaaaggctgtcaggaatctgtggtgtaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatagctgcagagctggcagctgaaaccaaaggctgtcaggaatctgtggtgtaaaat 380
Query: 181 aaatctgtgtgctcagtaatgctgggaaggagaattagttaagagagagaggaattgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctgtgtgctcagtaatgctgggaaggagaattagttaagagagagaggaattgact 440
Query: 241 tcctctgatgtggaaaaatcctatagactctaacttgatgtaaatttcacatagaagaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctttgatgtggaaaaatcctatagactctaacttgatgtaaatttcacatagaagaca 500
Query: 301 tcattactggttcctcttttgttaacatttgacacgtttctggcagcttcacactaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattactggttcctcttttgttaacatttgacacgtttctggcagcttcacactaaatg 560
Query: 361 cacaataagttgatctatggcaaagcaagcaagtcagcagacttatgctagaacctaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaataagttgatctatggcaaagcaagcaagtcagcagacttatgctagaacctaaat 620
Query: 421 aaacaagacctctaatgcagagccccgaggaagcaatcaaaatgcatcttctctattata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaagacctctaatgcagagccccgaggaagcaatcaaaatgcatcttctctattata 680
Query: 481 gatgtaaagcttttaaaagccaacaatgggctcacacatgaccctcacacccacttgttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatgtaaagcttttaaaagccaacaatgggctcacacatgaccctcacacccacttgttt 740
Query: 541 ctactcatcctccagccccttcctgt 566
||||||||||||||||||||||||||
Sbjct: 741 ctactcatcctccagccccttcctgt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
