BAC Information

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BAC

Clone NameMSMg01-356B09
Chromosome1 (Build37)
Map Location 61,436,585 - 61,627,166
singlet/doubletdoublet
Overlap genenone
Upstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356B09.T7 (MSMg01no356_b09.b1)MSMg01-356B09.TJ (MSMg01no356_b09.g1)
ACCAG466316AG466317
length750758
length of high quality
(start - end)
599 (41 - 639)430 (71 - 500)
definitionCHROMAT_FILE: MSMg01no356_b09.b1 PHD_FILE: MSMg01no356_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:42 2005CHROMAT_FILE: MSMg01no356_b09.g1 PHD_FILE: MSMg01no356_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,626,624 - 61,627,166)(61,436,585 - 61,437,014)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTGGACTGTACCAGTTCTGCGAATTTTGAAGGGTTATACATTTACACTC
GGTAGTAAGTATTCAAATCTCAGAACTATGGAAACACATCATTCCTTTGT
TTCTCTACCACCTGTCCCTGAAATGTACTGTGTGTACAAAGAAAAGTTCC
AGTACCCGAACACCCAGGCATACCTTCACTTCCTGTTTGCATACTGTTTC
CTGGGGTGGGAAGCAGTTTTGCATATCCACAGTTAAGCCATCAGTTAGAC
AGATTATTGCCCTCAGCCAGCAAATAAATCCTAGACGAATATACACAAGA
GTAAAGAGAAAGATTTATGTTTATTAATATGTGATTATTCATTCAGTCAA
CAGATTTTATTGAGTCCCTACCATGTGCTAGGAATTGTTTTCAATATAAG
AACAAAGGATTTTGGTGATAAGACAGATGAGATAAATAAATAAAGGGTAC
TGTACCCAAACAGAGCCTCTTAGAGCCCCCAGGGTAGTCAAAAGTTTACA
TGCACGTGCACATGTATGTCCACATACACACACACACCCTCTCTCTCTCT
CTCTCTCTCTCTCTCACACACACACACACACACCTTTTTTTTTGCTTTGC
TAATACTCTATTGTTCTAAGAGACCCGTGATAATTAAAATTTTTGTTTCC
AGTATATTCCCTGGCATAATTATATAACAATGAATATGCTTGCTGATTTC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTACCTGACTTAAGATTTATTGCTTTTTA
ACTAGAAATATAAGGCTCCGCACACTCTGCTCCCGGAGTTGGCTGTGCGA
ACGGTCCATTCCTTCTCTCCAGTTTGAGTTCGGGGGAAACCCAGCAGAGG
AAATGCTAATCGGGTGCAGGGGTTGTGGGCAGAAGAATGGGCTGAACAAT
GCGGCTTCATTAGGACTGGCACATTGGAACCCCAGGACTCTGGTGCTCAG
TTCTGCTTCCACAATCTCACCACAGGGACCACGGGCCAGTCACCTCCCAA
CTAGCATAATTGGAAAGACTCTAAGAGGCCCCGAAGTGCTGAAGTGCTGT
AAATTGGCAGCGTTCGGTTCTGATGAACATTAAAGGGAGTGCGTGGTTAA
TTCCTCCGCTCATGCTGATCCCACAGTCTTCCCACTGGGGGCTTTTGGCT
TGGAGCATCGTGGCGCCATTTGTTCTGCCTGGATTCTCCACCAGGCCTGA
GATCTCAAGGTGAGCTAATAGGCTCGGCTCCCCACCCTTTATTTTTATCT
GGATTCTTCCACCTCCAAGTATTTTAATAACCCCGGGTTTTTTGCACCTC
TTAATAACTTTGCCAATGCCGTAATCATTNACTGCCCTTTGTTCCCGTCG
GGTGGTTTTCACTTTCTCTTTATTTTGCTTTTCCACCTCTTGTTGTTCAT
TTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_b09.b1 MSMg01no356_b09.b1 CHROMAT_FILE:
MSMg01no356_b09.b1 PHD_FILE: MSMg01no356_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:42 2005
         (599 letters)



>mm_chr1_61626621_61627619
          Length = 999

 Score =  957 bits (495), Expect = 0.0
 Identities = 531/543 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtggactgtaccagttctgcgaattttgaagggttatacatttacactcggta 64
           ||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattcagtggactgaattagttctacgaattttgaagggttatacatttacactcggta 487

                                                                       
Query: 65  gtaagtattcaaatctcagaactatggaaacacatcattcctttgtttctctaccacctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 486 gtaagtattcaaatctcagaactatggaaacacatcattcctttgttcctttaccacctg 427

                                                                       
Query: 125 tccctgaaatgtactgtgtgtacaaagaaaagttccagtacccgaacacccaggcatacc 184
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 426 tccctgaaatgtactgtgtgtacaaaggaaagttccagtacccggacacccaggcatacc 367

                                                                       
Query: 185 ttcacttcctgtttgcatactgtttcctggggtgggaagcagttttgcatatccacagtt 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcacttcttgtttgcatactgtttcctggggtgggaagcagttttgcatatccacagtt 307

                                                                       
Query: 245 aagccatcagttagacagattattgccctcagccagcaaataaatcctagacgaatatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aagccatcagttagacagattattgccctcagccagcaaataaatcctagacgaatatac 247

                                                                       
Query: 305 acaagagtaaagagaaagatttatgtttattaatatgtgattattcattcagtcaacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acaagagtaaagagaaagatttatgtttattaatatgtgattattcattcagtcaacaga 187

                                                                       
Query: 365 ttttattgagtccctaccatgtgctaggaattgttttcaatataagaacaaaggattttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttttattgagtccctaccatgtgctaggaattgttttcaatataagaacaaaggattttg 127

                                                                       
Query: 425 gtgataagacagatgagataaataaataaagggtactgtacccaaacagagcctcttaga 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 126 gtgataagacagatgagataaataaatgaagggtactgtacccaaacagagcctcttaga 67

                                                                       
Query: 485 gcccccagggtagtcaaaagtttacatgcacgtgcacatgtatgtccacatacacacaca 544
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 66  gcccccagggtagtcaaaagtttacatgcacgtgaacatgtatgtgcacatacacacaca 7

              
Query: 545 cac 547
           |||
Sbjct: 6   cac 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no356_b09.g1 MSMg01no356_b09.g1 CHROMAT_FILE:
MSMg01no356_b09.g1 PHD_FILE: MSMg01no356_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:43 2005
         (430 letters)



>mm_chr1_61436385_61437214
          Length = 830

 Score =  832 bits (430), Expect = 0.0
 Identities = 430/430 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacctgacttaagatttattgctttttaactagaaatataaggctccgcacactctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacctgacttaagatttattgctttttaactagaaatataaggctccgcacactctgc 260

                                                                       
Query: 61  tcccggagttggctgtgcgaacggtccattccttctctccagtttgagttcgggggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccggagttggctgtgcgaacggtccattccttctctccagtttgagttcgggggaaac 320

                                                                       
Query: 121 ccagcagaggaaatgctaatcgggtgcaggggttgtgggcagaagaatgggctgaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagcagaggaaatgctaatcgggtgcaggggttgtgggcagaagaatgggctgaacaat 380

                                                                       
Query: 181 gcggcttcattaggactggcacattggaaccccaggactctggtgctcagttctgcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcggcttcattaggactggcacattggaaccccaggactctggtgctcagttctgcttcc 440

                                                                       
Query: 241 acaatctcaccacagggaccacgggccagtcacctcccaactagcataattggaaagact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaatctcaccacagggaccacgggccagtcacctcccaactagcataattggaaagact 500

                                                                       
Query: 301 ctaagaggccccgaagtgctgaagtgctgtaaattggcagcgttcggttctgatgaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaagaggccccgaagtgctgaagtgctgtaaattggcagcgttcggttctgatgaacat 560

                                                                       
Query: 361 taaagggagtgcgtggttaattcctccgctcatgctgatcccacagtcttcccactgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagggagtgcgtggttaattcctccgctcatgctgatcccacagtcttcccactgggg 620

                     
Query: 421 gcttttggct 430
           ||||||||||
Sbjct: 621 gcttttggct 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)