Query= MSMg01no356_c21.b1 MSMg01no356_c21.b1 CHROMAT_FILE:
MSMg01no356_c21.b1 PHD_FILE: MSMg01no356_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:49 2005
(612 letters)
>mm_chr1_122786646_122787657
Length = 1012
Score = 1000 bits (517), Expect = 0.0
Identities = 587/617 (95%), Gaps = 15/617 (2%)
Strand = Plus / Plus
Query: 5 gaattcaaagtcaattatctcagtggagagtctgataggggcaaactaacagtaccctca 64
|||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||| |||
Sbjct: 204 gaattcaaagtcaagtatgtcaatggagagtctgataggggcaagctaacagtacc-tca 262
Query: 65 attaatggtctcaaaaatcaaatgtcatgggtacctgtcgcgaagcaccatgatca--at 122
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct: 263 attaatggtctcaaaaatcaaatgtcatgggtacctgtcgagaagcaccatgagcaccaa 322
Query: 123 gggcaagaagtagtctgggaagtggcaaaggctgaggatacagccaagccttcaatgatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggcaagaagtagtctgggaagtggcaaaggctgaggatacagccaagccttcaatgatg 382
Query: 183 ctagaggtccagtgttttcatgtcctttgaagttagaaatccatactagataaccatcca 242
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccacaggtccagtgttttcatgtcctttgaagttagaaatccatactagataaccatcca 442
Query: 243 aatgcatgaatgttatcaatgaaaaactccaccacaatgctggtaggcagggacaggagg 302
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 443 aatgcatgaatgttatcaatgaaaaaccccaccacaatgctggcaggcagggacaggagg 502
Query: 303 atccctggagttccctggttagccagtcttgctaaaattgtgagctcctgcttcagtgag 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atccctggagctccctggttagccagtcttgctaaaattgtgagctcctgcttcagtgag 562
Query: 363 agttgtctcaaaaaaagtagagagtaactaagtaagatgcataatgaaagagtaaaagtg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agttgtctcaaaaaaagtagagagtaactaagtaagatgcataatgaaagagtaaaagtg 622
Query: 423 gcctaaatagaaggtgagggttgcccttccttctgctttctgtgtatgtgtggataaagc 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcctaaatagaaggtgagggctgcccttccttctgctttctgtgtatgtgtggataaagc 682
Query: 483 aaagaaactcttagcatatattgcaacttttttttt---tt----ttccatttttagtct 535
||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct: 683 aaagaaactcttagcatatattgcaacttttttttaaccttgaacttc-----ttagtct 737
Query: 536 ccagaagtgtcagaaagtagtttctactttttataagatacctgcctatggtattctgat 595
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccagaagtgtcagaaagtaatttctactttttataagatacctgcctatggtattctgat 797
Query: 596 acaggagggcagtgggc 612
|||||||||||||||||
Sbjct: 798 acaggagggcagtgggc 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_c21.g1 MSMg01no356_c21.g1 CHROMAT_FILE:
MSMg01no356_c21.g1 PHD_FILE: MSMg01no356_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:49 2005
(399 letters)
>mm_chr1_122950375_122951173
Length = 799
Score = 764 bits (395), Expect = 0.0
Identities = 398/399 (99%)
Strand = Plus / Minus
Query: 1 tctcaatgacactcaacctcactgaagcataggaaataactgagagcagtaatacttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tctcaatgacactcaacctcactgaagcataggaaataactgagagcagtaatacttgta 540
Query: 61 agaaatgaaacaaaatgaggctaatgcaaataaaaaggagttacctactggcttttccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agaaatgaaacaaaatgaggctaatgcaaataaaaaggagttacctactggcttttccca 480
Query: 121 attaattagcatatgcacattcaattattcataccttagggaactcatttaggcaatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 attaattagcatatgcacattcaattattcataccttagggaactcatttaggcaatcag 420
Query: 181 gtgtcccataaatattcattattatttaccttcggtgttcagtccggaggattggaaatt 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 419 gtgtcccataaatattcattattatttaccttcggtgttcagtccagaggattggaaatt 360
Query: 241 ggcagtgttttctcaatatatttcacaactggttggtttgaaaaagattacctggaccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggcagtgttttctcaatatatttcacaactggttggtttgaaaaagattacctggaccta 300
Query: 301 aactcctatgtcattaaggccaagaacgttgtgccacatgaatgctgaattaaaagagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aactcctatgtcattaaggccaagaacgttgtgccacatgaatgctgaattaaaagagcc 240
Query: 361 tgttgtcaactcctgggtggggtctctgtcatccacctg 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgttgtcaactcctgggtggggtctctgtcatccacctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
