Query= MSMg01no356_g21.b1 MSMg01no356_g21.b1 CHROMAT_FILE:
MSMg01no356_g21.b1 PHD_FILE: MSMg01no356_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:09 2005
(356 letters)
>mm_chr1_190613385_190614139
Length = 755
Score = 644 bits (333), Expect = 0.0
Identities = 348/355 (98%), Gaps = 5/355 (1%)
Strand = Plus / Plus
Query: 5 gaattcagggaactatgcctaaaataattaacgcaatctaggagaggcttcacacaaaag 64
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggggaactatgactaaaataattaacgcaatctaggagaggcttcacacaaaag 264
Query: 65 gttgtctttcccctacacagatgtaagcagcctgtgtcctctgagctcaccactgtgcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgtctttcccctacacagatgtaagcagcctgtgtcctctgagctcaccactgtgcta 324
Query: 125 ggtagtatcccagaaccgtgcgacgctttaggcttgccactaaggggcaccgtattctct 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gg-agtatcccagaaccgtgcgacgctttaggcttgccactaaggggcaccgtattctct 383
Query: 185 ggctaaagaaaggtttaagacaaatggtaattatatctcagactagagagaaagttcttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctaaagaaaggtttaagacaaatggtaattatatctcagactagagagaaagttcttc 443
Query: 245 taaccagaggaagcaaggaggggggtaaataaatggcagataaatgatagatggatggat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaccagaggaagcaaggaggggggtaaataaatggcagataaatgatagatggatggat 503
Query: 305 agatagatggatagatagat----agatagatagatagatagatgatagatagat 355
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 agatagatggatagatagatggatagatagatagatagatagatgatagatagat 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 755
Length adjustment: 9
Effective length of query: 347
Effective length of database: 746
Effective search space: 258862
Effective search space used: 258862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_g21.g1 MSMg01no356_g21.g1 CHROMAT_FILE:
MSMg01no356_g21.g1 PHD_FILE: MSMg01no356_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:09 2005
(396 letters)
>mm_chr1_190780850_190781642
Length = 793
Score = 727 bits (376), Expect = 0.0
Identities = 391/398 (98%), Gaps = 7/398 (1%)
Strand = Plus / Minus
Query: 1 ataagaatgaaagcaagccacactaggaagagtctatctttcc-tacataccacatgggt 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 593 ataagaatgaaagcaagccacactaggaagagtctatctttccatacataccacatgggt 534
Query: 60 ttcccctggtgggtagacgctcagtggggtcattcgtttctgaagaggtaccaagggagg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttcccctggtgggtagacgctcagtggggtcattcgtttctgaagaggtaccaagggagg 474
Query: 120 tcgctctctgatacatggttccttgtggatttttctttgtagaatcaaggacagaaaaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcgctctctgatacatggttccttgtggatttttctttgtagaatcaaggacagaaaaat 414
Query: 180 ggccaacaagatcaggcccaccacagccattaccataataaaccacagctcactgtagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggccaacaagatcaggcccaccacagccattaccataataaaccacagctcactgtagaa 354
Query: 240 ctctgtgcttttggtccctgctcccttcttttctccaggagttgat-agcaccaggcctg 298
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 353 ctctgtgcttttggtccctgctcccttcttttctccaggagttg-tcagcaccaggcctg 295
Query: 299 caaaaaccacggaaagaaagctttgggtgctgtgtttgactgagaagcaggacctcccgt 358
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 294 caaaaaccacggaaagaaagctttgggtgctgtgtt----tgagaagcaggacctcccgt 239
Query: 359 gcttgagtctaactgcatgtgagccacagtgttggctt 396
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcttgagtctaactgcatgtgagccacagtgttggctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 793
Length adjustment: 9
Effective length of query: 387
Effective length of database: 784
Effective search space: 303408
Effective search space used: 303408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
