XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTT
CTCTTTCCATAGCTTTTTTGTCATAGCAATGAGAAAAATATCTAATACTG
CCTGGATACATGTTCATACATACATAAGTACATACATACATACATGCATA
CATACATACATACATGCATATACACACACATACACCCATGTGCTCACATG
CACTTACACACATATGAAACAGACAGAAAGAAAGAGATAGAGAGAGATAA
AGAGACAGAGAGAGACAGATAGATCATACTTCCACAGTCCCTATAAGAAC
ACCACTCACACACTCTTATAAACTTAAGCCTCCACCTCATCAAAGACCAC
AACAGTTATGCATAAAATCATCTTGGGGGCCACATAATTTTCAGGGGTCA
TTCAATATTCAAACAGTAACATTTATACATCTGTTATTAGAAAAGCAGAC
AAAGAAAAGTCACTTTCTGGGAGGGTAGGCCTCCCTTAGCGATCCATAAA
CTGTCTTTCCTCTAATGTGGCTGAGGTAAAGAGTACGTTGAGGGATAGGC
TTGGGAGCATAACATTTCTTCTTTACTCTTTTCTAAAAGTAGATGTACAG
GACAAGCATTCTGGTGAAAAGCAAATTAAGCAAGAATTGCCTTGATTTTG
GGCTTCCTGCACAAGTGAAATGACATAAAGTCAGGCATGTGGCTGTCTCC
ATAAGGCAAGCTGCAGATAACCATTTGCATCATACATAGATCTATGACTG
TCCTGTCCTCT

CAGGGCCCCCCCCCCCCCCNNNNNNNNCNNNCCCCAAACANNNNANCCGN
NCNCCCCTGNCCCCCACTTTANTGACACTATANAAAANAATCCCCCCNNA
AATTCCCTGAAATTTCCAGACTTTATCTGAAAGGGGGCCAACCTTGCAAA
GGTTTNCCCCCCTAAACAACAGGACCTGGGGGGTCGGGGCGGGGGGGGGG
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTGTTGGGGG
GGGGGGGGGNNNNNCNCCCNNNAAAACCCCCCCCCTACTTTGGGGGGGGC
CCCCNNNNNNNNNNNNNNGGTAANATATTTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNNNNNNAACAAAAACANNNNNNNNAAAAA
NTTTTAACAAACAAANAATCANACCCNNNCCCCCCCCCCTTCTTGGCTGT
GGGGG

Query= MSMg01no356_i13.b1 MSMg01no356_i13.b1 CHROMAT_FILE:
MSMg01no356_i13.b1 PHD_FILE: MSMg01no356_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:17 2005
         (566 letters)



>mm_chr1_115788279_115789243
          Length = 965

 Score =  942 bits (487), Expect = 0.0
 Identities = 529/545 (97%), Gaps = 5/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttttgtcatagcaatgagaaaaatatctaatactgcctggatacatgttcatacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 cttttttgtcatagcaatgagaaaaatatctaatactgcctggatacatgttcatacata 892

                                                                       
Query: 61  cataagtacatacatacatacatgcatacatacatacatacatgcatatacacacacata 120
           |||| |||||| ||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 891 cataggtacatgcatacatacatgcatacatacatacata----catatacacacacata 836

                                                                       
Query: 121 cacccatgtgctcacatgcacttacacacatatgaaacagacagaaagaaagagatagag 180
           ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 835 cacccgtgtgctcacatgcacttacatacacatgaaacagacagaaagaaagagatagag 776

                                                                       
Query: 181 agagataaagagacagagagagacagatagatcatacttccacagtccctataagaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 agagataaagagacagagagagacagatagatcatacttccacagtccctataagaacac 716

                                                                       
Query: 241 cactcacacactcttataaacttaagcctccacctcatcaaagaccacaacagttatgca 300
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cactcacacacac-aataaacttaagcctccacctcatcaaagaccacaacagttatgca 657

                                                                       
Query: 301 taaaatcatcttgggggccacataattttcaggggtcattcaatattcaaacagtaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taaaatcatcttgggggccacataattttcaggggtcattcaatattcaaacagtaacat 597

                                                                       
Query: 361 ttatacatctgttattagaaaagcagacaaagaaaagtcactttctgggagggtaggcct 420
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 596 ttatacatctgttattagaaaagcagacaaaggaaagtcactttctgggaggataggcct 537

                                                                       
Query: 421 cccttagcgatccataaactgtctttcctctaatgtggctgaggtaaagagtacgttgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cccttagcgatccataaactgtctttcctctaatgtggctgaggtaaagagtacgttgag 477

                                                                       
Query: 481 ggataggcttgggagcataacatttcttctttactcttttctaaaagtagatgtacagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 476 ggataggcttgggagcataacatttcttctttactcttttctaaaagtacatgtacaggg 417

                
Query: 541 caagc 545
           |||||
Sbjct: 416 caagc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space:   530980
Effective search space used:   530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)