Query= MSMg01no356_j17.b1 MSMg01no356_j17.b1 CHROMAT_FILE:
MSMg01no356_j17.b1 PHD_FILE: MSMg01no356_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:23 2005
(560 letters)
>mm_chr1_113191172_113192131
Length = 960
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1 gacagattttataaatagaatattctgtgaaatgtgttccctggatgctgatgaatatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gacagattttataaatagaatattctgtgaaatgtgttccctggatgctgatgaatatgt 387
Query: 61 aaatatatctctttctagtagtactttattcatgtcatcatatagcactatattttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaatatatctctttctagtagtactttattcatgtcatcatatagcactatattttcttt 327
Query: 121 attattttatgctctcataaaacatttcaatgttatttctgttgtattagtataggaaat 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attattgtatgctctcataaaacatttcaatgttatttctgttgtattagtataggaaat 267
Query: 181 ttattttagtgacatttcaatataaagcaaactttcttagcgaaagtcaattttatatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttattttagtgacatttcaatataaagcaaactttcttagcgaaagtcaattttatatga 207
Query: 241 aaaata 246
||||||
Sbjct: 206 aaaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_j17.g1 MSMg01no356_j17.g1 CHROMAT_FILE:
MSMg01no356_j17.g1 PHD_FILE: MSMg01no356_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:23 2005
(438 letters)
>mm_chr1_113100659_113101486
Length = 828
Score = 746 bits (386), Expect = 0.0
Identities = 422/438 (96%), Gaps = 10/438 (2%)
Strand = Plus / Plus
Query: 1 tttgtaataaatatgtagagatgataaagtaaaaaaaaatatgaagtataaacattgatt 60
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 201 tttgtaataaatatgtagagatgataaagt-aaaaaaaatacgaagtataaacattgatt 259
Query: 61 taaagctggaaaagtataattaatctatctatatctatatctttatctatatcttttatt 120
||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 260 taaagctggaaaagtataattaatctatc--tatcta------tatctatatctttta-t 310
Query: 121 tttatttaaaatacttggaaattgaagtctggaaactcagatatttgaattttaatactt 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttatttaaaatacttggaaaatgaagtctggaaactcagatatttgaattttaatactt 370
Query: 181 tcacaaccacatttaataaggataaataagaacactaaggctaattatcttaagtagcgt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 371 tcacaaccacatttaataaggataaataagaacactaaagctaattatcttaagtagcgt 430
Query: 241 agctcccatggatattcctgatgctgtcccaaaataaccaaagaaatatataaaaattaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agctcccatggacattcctgatgctgtcccaaaataaccaaagaaatatataaaaattaa 490
Query: 301 gaaaagacataaactattagagtaggctatactgacataaatactgctcttgaagaaaaa 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaaaagaaataaactattagagtaggctatactgacataaatactgctcttgaagaaaaa 550
Query: 361 agtggtaagcttatttttacaatatattcctaataacttttccactgcattcttctttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtggtaagcttatttttacaatatattcctaataacttttccactgcattcttctttaa 610
Query: 421 attaatctaaatttgcta 438
|||||| |||||||||||
Sbjct: 611 attaatttaaatttgcta 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 828
Length adjustment: 9
Effective length of query: 429
Effective length of database: 819
Effective search space: 351351
Effective search space used: 351351
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
