BAC Information

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BAC

Clone NameMSMg01-356L19
Chromosome1 (Build37)
Map Location 52,570,300 - 52,748,250
singlet/doubletdoublet
Overlap geneGm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736
Downstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356L19.T7 (MSMg01no356_l19.b1)MSMg01-356L19.TJ (MSMg01no356_l19.g1)
ACCAG466807AG466808
length775768
length of high quality
(start - end)		232 (34 - 265)445 (65 - 509)
definitionCHROMAT_FILE: MSMg01no356_l19.b1 PHD_FILE: MSMg01no356_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:33 2005CHROMAT_FILE: MSMg01no356_l19.g1 PHD_FILE: MSMg01no356_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(52,570,300 - 52,570,525)(52,747,922 - 52,748,250)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAATA
GCTTCCTTGTTAAACAAAACCAAACAAATTAACATGCATTGCATTATTAA
AAGTGCTATAGAATTTTTAAGGAGTAAATGATTATAATGGTCCCCCACTT
CCCTCCTTTGAATATTCAAAGCATATTTAAATACCTTGCAGAAAGTAAGT
ATTTAAGTAATTTTGACTCCCTGTAGGGTTTTTTTGGTTTGTTTGTTTGG
TTGGTTGGTTTTTGGNTTTTGNNNNNTNNNNNNNNTNNTTNNTNNNTNNN
NTNNTTNNNTTTTTTTTTTTTTTTNNTNNNTTTTTTTTTTTTTTNTTTTT
TTTTTTTTCTTTCNTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTCTTTT
TTTTTTTCCNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTT
TTTTTNTTNTTTTTTTTCCTTTTTTTTCTTCCCTTTCTTTTTTTCTCTTT
TTTCCTTCTCTTCCCCCCTCCTTCTTTTTCCTTCCCCTTTCCTCCCTCTC
CTTCTTCTTTTTTTCTTTCCCTCTTTTCTTCCTCTTTCTTTCCCCCTTCT
TTTTTCTTCTTCTTTCCCCCCTTTTCTTTCTTCCTCTTTTCTTCTTCTCT
TTTCCCCCTTTTCCTTTCCCTCTCTTTCTTTTTTTCTCCTCTTTTTTCCT
CTTCTCCCCTTCTTTTTTCTTTTTTTTCTCCTTTCTTCTCTTTCTCTTCC
CTCCCCCTCTTCTTTCTCTTTATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACAGTGACCAAAGAGAGGCAATCTGTAGCAGTTAC
ACAGCCTGGATTGGGGACTGCAGAGACCAGGGATCAGCACTTGATTTCTG
GGATAAGTGTGTCCCTGGCTCTTCAGCAGTGATGGCTTGTTTCTAACATT
GAGCTTCAGCATTAAACAACACAACACAGTAGAAGACTGCACTAGTTCTA
GTTTTAAAGGAACTAGAGTTTAGAAGGGCTGAGGTGTAAGAGGCCAGGAG
ATTTAGGGGATGGGGTATGATGATTCCAGTACCGTGCTGGTCCATGTGAG
CCACTAAGGAAGATGAGACATCTTTACAGTATTGCCAAGAGACCCTTGTC
TAATACAGTCCTGTTTCTGAAGAAACTAAACAGAACTCCCCAGTCTAACT
TCGTGTGCATGTCTGTGTGTCTGTCTGTCTGTGACTTATAGACACATACA
AATTTAGTAAGTATGTTTATTTATAAAGTATAAAATATTAATACCATTGG
GTGCGCCTGGGATTGGAATTATAATTTAGCCTTTAAGTGTGCCTTTTATA
GCCTTTTCTTTTTATTTCAGTCATGGGCCTTTCAGTTTAAAATTTTTTCA
CCTGCTTTTGCCCGTTTTATATACTTTCCCCACCATTTTTCCTCCACTGT
CCTTTTCTTTCTCGGTGTTTTACCTTTTTTCCTTTCATCCATACCCCCCC
TGTTTGTTTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_l19.b1 MSMg01no356_l19.b1 CHROMAT_FILE:
MSMg01no356_l19.b1 PHD_FILE: MSMg01no356_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:33 2005
         (232 letters)



>mm_chr1_52570094_52570725
          Length = 632

 Score =  422 bits (218), Expect = e-122
 Identities = 224/226 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcataaatagcttccttgttaaacaaaaccaaacaaattaacatgcattgcattatta 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcataaatagcttcattgttaaacaaaaccaaacaaattaacatgcattgcattatta 266

                                                                       
Query: 67  aaagtgctatagaatttttaaggagtaaatgattataatggtcccccacttccctccttt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaagtgctatagaatttttaaggagtaaatgattataatggtcccccacttccctccttt 326

                                                                       
Query: 127 gaatattcaaagcatatttaaataccttgcagaaagtaagtatttaagtaattttgactc 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 gaatattcaaagcatatttaaataccttgcagaaagtaagtatttaagtaattttggctc 386

                                                         
Query: 187 cctgtagggtttttttggtttgtttgtttggttggttggtttttgg 232
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctgtagggtttttttggtttgtttgtttggttggttggtttttgg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no356_l19.g1 MSMg01no356_l19.g1 CHROMAT_FILE:
MSMg01no356_l19.g1 PHD_FILE: MSMg01no356_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:33 2005
         (445 letters)



>mm_chr1_52747606_52748450
          Length = 845

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 117 gatggcttgtttctaacattgagcttcagcattaaacaacacaacacagtagaagactgc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gatggcttgtttctaacattgagcttcagcattaaacaacacaacacagtagaagactgc 586

                                                                       
Query: 177 actagttctagttttaaaggaactagagtttagaagggctgaggtgtaagaggccaggag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 actagttctagttttaaaggaactagagtttagaagggctgaggtgtaagaggccaggag 526

                                                                       
Query: 237 atttaggggatggggtatgatgattccagtaccgtgctggtccatgtgagccactaagga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atttaggggatggggtatgatgattccagtaccgtgctggtccatgtgagccactaagga 466

                                                                       
Query: 297 agatgagacatctttacagtattgccaagagacccttgtctaatacagtcctgtttctga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agatgagacatctttacagtattgccaagagacccttgtctaatacagtcctgtttctga 406

                                                                       
Query: 357 agaaactaaacagaactccccagtctaacttcgtgtgcatgtctgtgtgtctgtctgtct 416
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 agaaactaaacagaactccccagtccaacttcgtgtgcatgtctgtgtgtctgtctgtct 346

                                        
Query: 417 gtgacttatagacacatacaaatttagta 445
           |||||||||||||||||||||| ||||||
Sbjct: 345 gtgacttatagacacatacaaagttagta 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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