BAC Information

Click to search

BAC

Clone NameMSMg01-357D10
Chromosome1 (Build37)
Map Location 16,563,623 - 16,564,157
singlet/doubletsinglet
Overlap geneUbe2w
Upstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
Downstream geneTceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357D10.T7 (MSMg01no357_d10.b1)MSMg01-357D10.TJ (MSMg01no357_d10.g1)
ACCAG467170AG467171
length765772
length of high quality
(start - end)		539 (44 - 582)429 (75 - 503)
definitionCHROMAT_FILE: MSMg01no357_d10.b1 PHD_FILE: MSMg01no357_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:09 2005CHROMAT_FILE: MSMg01no357_d10.g1 PHD_FILE: MSMg01no357_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGATCTTTAACAACAGGAATCCCAGGTACTTAAAAGGTTATAAAT
CCTCAATAAATACATGTAATGAAGCCGGTACTAACTGGTTTGAACCTGAG
TATGAGTCAAAATCATCACTCTTCTTTCCCATAGCTAAGAGGTAAAAACC
AAACAACAAAACAAAAAACCTTCAAGGAATAGAGTTTTCTAACTATAAGC
AAACATTATTAATAGATGCTAGATGGGCACACATAGGAACACTGGAATCA
ATCCTATTTTGGGTTAGGACAAATATATGACTATAAAAGGTTGTGAAAGA
CCATTAATAGTCTTTAACCTCTTGGCTAAACTACTGTGGTAATATAACAC
CTTGAAAAGAAAATCCCAGAATAATGATGTTAATTGTCTCTGGAACTACC
AAAGCCTCTACAAAATCCCATCTCCAATATAACACAGAGAAGTTACCTCC
ATCACCACTGACATCACTGAGCTTATGGGAATGTAAGAGCTAGAGAAAGG
ACATTACATTCATTCCCCCACAATTATAAAGGCGTATTACCCTGGAAATC
CACCTCCTCAAGTCTCACCAGGGACCCAAAACTATANAACATATGCTGGT
TATCTTGAGAGACAAAAAATTTAAAGCTAAGTTCTTTTCCCTTAACAGTT
GAAAGGAGATTAGTTTTCCTTTGGCCAACTGACCTTTAAGGAGAATTTTT
ACATATAACAGGGAN

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGGTGATCAGATAAGATGCATGGG
ATAAATTCAATATTTTTGTATCTCTGGAGGCATGTTTGTGACCAATTATA
TGGTCAATTTTGGAGGAGGTACCATGAGGTGCTGAGAAGAAGATATATCC
TTTTGTTTTAGGATAAAATTTTCTGTAGATATCTGTTAAATCCATTTGTT
TCATAACTTCTGTTAGTGTCCATGTGTCTCTGTTTAGTTTCTATTTCCAG
GATCTGTCTATTGGTGAAAATGGAGTCTTGAAGTCTCCCACTATTATTGC
GTAAGGTGCAATGTGTGCTTTGAGCTTTACTAAAGTTTCTTTAATGAATA
TGGCTGCTCTTGTATTTGGAGCATAAATATTTAGAATTAAGAGTTCTTCT
TGGTAGATTTTACCTTTGATGTGTATGAAGTGCCTCTCCTTGTCTTTTTT
GATAACTTTGGGTTAGAATTTGATTTTATTCGATATTAAATTGGCTACTC
CAGCTTGTTTCTTCCGATCATTTGCTTGGGAAATTGCTTTCCTGCCCTTT
CCATCTGAAGTAAAGGCCGGTCCTTTGGCCTGAGTTGGGCTATCCAGTTT
CTCACCACATTTTTTCGTTCCTTTCTTTTTTTTTTGTTTTCTTACCTTTC
TTCCTGTTATCCTTAATACTCTTCATTTTATTCTCTTCTTTCCTTTCTTT
ACTATTTTGTTTCTCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_d10.b1 MSMg01no357_d10.b1 CHROMAT_FILE:
MSMg01no357_d10.b1 PHD_FILE: MSMg01no357_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:09 2005
         (539 letters)



>mm_chr1_16563419_16564357
          Length = 939

 Score =  980 bits (507), Expect = 0.0
 Identities = 528/535 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgatctttaacaacaggaatcccaggtacttaaaaggttataaatcctcaat 64
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgatctttagcaacaggaatcccaagtacttaaaaggttataaatcctcaat 264

                                                                       
Query: 65  aaatacatgtaatgaagccggtactaactggtttgaacctgagtatgagtcaaaatcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatacatgtaatgaagccggtactaactggtttgaacctgagtatgagtcaaaatcatc 324

                                                                       
Query: 125 actcttctttcccatagctaagaggtaaaaaccaaacaacaaaacaaaaaaccttcaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcttctttcccatagctaagaggtaaaaaccaaacaacaaaacaaaaaaccttcaagg 384

                                                                       
Query: 185 aatagagttttctaactataagcaaacattattaatagatgctagatgggcacacatagg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 aatagagttttctaactataagcaaacattattaatagatgctagatgggcacacacagg 444

                                                                       
Query: 245 aacactggaatcaatcctattttgggttaggacaaatatatgactataaaaggttgtgaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 aacactggaatcaatcctattttgggttaggacaaatatatgactatagaaggttgtgaa 504

                                                                       
Query: 305 agaccattaatagtctttaacctcttggctaaactactgtggtaatataacaccttgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaccattaatagtctttaacctcttggctaaactactgtggtaatataacaccttgaaa 564

                                                                       
Query: 365 agaaaatcccagaataatgatgttaattgtctctggaactaccaaagcctctacaaaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaatcccagaataatgatgttaattgtctctggaactaccaaagcctctacaaaatc 624

                                                                       
Query: 425 ccatctccaatataacacagagaagttacctccatcaccactgacatcactgagcttatg 484
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 625 ccatctccaatataacacagagaggttacctccatcactactgacatcactgagcttatg 684

                                                                  
Query: 485 ggaatgtaagagctagagaaaggacattacattcattcccccacaattataaagg 539
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaacgtaagagctagagaaaggacattacattcattcccccacaattataaagg 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |