Query= MSMg01no357_e12.b1 MSMg01no357_e12.b1 CHROMAT_FILE:
MSMg01no357_e12.b1 PHD_FILE: MSMg01no357_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:14 2005
(401 letters)
>mm_chr1_39933187_39933987
Length = 801
Score = 632 bits (327), Expect = 0.0
Identities = 373/397 (93%), Gaps = 14/397 (3%)
Strand = Plus / Minus
Query: 5 gaattcctggaagacagagtggttaggaccgagttggtggtgagcaaaggggtcttgttg 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 774 gaattcctggaagacagagtggttaggaccgagttggtcgtgagcaaaggggtcttgttg 715
Query: 65 gaaactctggaccatgaaacaatcctgttcttccacacagtgcatgtaattacacagagc 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 714 gaaactctggaccatgaaacaatcctgttcctccacacagtgcatgtaattacacagagc 655
Query: 125 aggcctggcgtttggggttttgttgttggttgtttattttgttttctttcgttttttaag 184
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 654 aggcctggcgtttggggttttgttgttggttctttattttgttttctttcgtt------- 602
Query: 185 acaagagtttcatcgcatagggcaagaggagaataaaatatcctcaccaacagaggaact 244
||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 601 -------tttcatcacatagggcaagagaagaataaaatatcctcaacaacagaggaact 549
Query: 245 gatatgtggataagagggggaacgttttgctagtaaaatataattaatcacacagtaaaa 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gatatgtggaaaagagggggaacgttttgctagtaaaatataattaatcacacagtaaaa 489
Query: 305 acctcatctgtatatattattgatcccaataagtgtaatgaactgaaatttatgagttaa 364
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 488 acctcatctgtatatattattgatcttaataagtgtaatgaactgaaatttatgagttaa 429
Query: 365 aaggcaaaaactggctcaaagataaagttaggcgggc 401
|||||||||||||||||||||| ||||||||||||||
Sbjct: 428 aaggcaaaaactggctcaaagaaaaagttaggcgggc 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_e12.g1 MSMg01no357_e12.g1 CHROMAT_FILE:
MSMg01no357_e12.g1 PHD_FILE: MSMg01no357_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:14 2005
(387 letters)
>mm_chr1_39747667_39748453
Length = 787
Score = 741 bits (383), Expect = 0.0
Identities = 386/387 (99%)
Strand = Plus / Plus
Query: 1 tttcagtgggctgccatgagtcccactgatggcactttgatgcaaagtcagccacaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcagtgggctgccatgagtcccactgatggcactttgatgcaaagtcagccacaaaga 260
Query: 61 actgagactttttaatctctctccttttaccatctgctcacttctgctgtggaattctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgagactttttaatctctctccttttaccatctgctcacttctgctgtggaattctgg 320
Query: 121 cagcttcagggtcagcatttcacaccccagccgtggcttcctcagttcctatgtgcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcttcagggtcagcatttcacaccccagccgtggcttcctcagttcctatgtgcacct 380
Query: 181 ggctgagtttggctacttgctagtctctcagggttttggctcttgggggtcagcagcttc 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgagtttggctacttgctggtctctcagggttttggctcttgggggtcagcagcttc 440
Query: 241 tttgaactcgcaggcacccttcctcagggcagatggctgtgctcagccatcatcccgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgaactcgcaggcacccttcctcagggcagatggctgtgctcagccatcatcccgaag 500
Query: 301 tgagccacacacagtagtgaacacctcctggggggttgctctctctttgtgatacccctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagccacacacagtagtgaacacctcctggggggttgctctctctttgtgatacccctg 560
Query: 361 gtcattaccgagacctaccctgaggac 387
|||||||||||||||||||||||||||
Sbjct: 561 gtcattaccgagacctaccctgaggac 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
