BAC Information

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BAC

Clone NameMSMg01-357E24
Chromosome1 (Build37)
Map Location 195,934,328 - 195,934,706
singlet/doubletsinglet
Overlap genenone
Upstream geneAA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357E24.T7 (MSMg01no357_e24.b1)MSMg01-357E24.TJ (MSMg01no357_e24.g1)
ACCAG467245AG467246
length753771
length of high quality
(start - end)		468 (43 - 510)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no357_e24.b1 PHD_FILE: MSMg01no357_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:16 2005CHROMAT_FILE: MSMg01no357_e24.g1 PHD_FILE: MSMg01no357_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATCTGATTTTCT
GGAGTCCACCTTCTTCAGTTCTTTACATATATTAGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGACCTTTTT
GTCTTATTGACGGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCGAT
TCAGGAATTTTTCCCTGGAAGCCCATATCTTCCAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATT
CTTCTACATGTTAACTAGTACAAGGAGATAGGAATGGATCAATTCACATT
CTTCTACATGTTAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTTTTCCCTGGATGGTTTAGCTCCCTTGTCAAGATAAGTGCCCTTT
CTATAATTGGGACAAAACACCCCTGGAAGGAGTGGCAAAAAAAGTTTGGA
GCTGAAACAAAGATGGACCTCTTTAGATACCTTATCCGGGATCCTCCCTT
ATAGCCCGCGCCAACGGAAAACCTTTGTTACTTATAAATTTTGTAAAGGA
CTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTAACTTCTCCCAAAAGATCCTATGGTGT
CTAGGTACCTAAGGGGTCAGACTAGATGCTCGGTTTTTAGAGGAGACTTA
GCCCTTACTCTACATAGAGACAGGCAGAACTTTCTTGGCCTCAGGCAAAG
GGCAGGGATTAGGGGATAATTCACTAGATATAAACAACTTAAATGAGCAG
GCCTAAAGGATTAGCCTCCCACTAAAGTCCACAAAAGCTCGCCCTCCTTT
GTAGGCTTCTGCTGGATTCCAGATGAGATCCTTGCGCCTGGCAAACTCTC
AAAAGGAGCCCTTAGATGTAGCTATTGAACACACTCCTATGTCCTACTTA
CTCCTTCTGGGTGAGCTCAGGACCCTGAGCTATTTATTTGTATTTTTTAA
AAGCAGGGGAGTTTATGATCTTCCCTGCACAGGGAAGAAAATAGCTAGGN
TTATTTAAGTAGCCNTAAAAGAAGGAAAGGTTATAAAACGGAGTTGGGGG
AAAACCGGGAGGCCCAGGCATGTGGAGGGGGAAGATTTAATGGTCTGGGG
AGCCCCGGTTACCCCCTCCCCCCCTGGGGGGAATACCCAGGATTTTTGTT
GGGTTGGGAATTTCCCCCCACTTTCTTTTCCGGGGGGGTTGGAACCAATT
TCCCCGGGTGGGGGGAGGGGCCCTCCGCGGGGAGGGGTTTCCAAAACTGG
GGGGGTGCGGGCCTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_e24.g1 MSMg01no357_e24.g1 CHROMAT_FILE:
MSMg01no357_e24.g1 PHD_FILE: MSMg01no357_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:16 2005
         (381 letters)



>mm_chr1_195934128_195934908
          Length = 781

 Score =  702 bits (363), Expect = 0.0
 Identities = 375/379 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctaacttctcccaaaagatcctatggtgtctaggtacctaaggggtcagactagatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctaacttctcccaaaagatcctatggtgtctaggtacctaaggggtcagactagatgc 260

                                                                       
Query: 61  tcggtttttagaggagacttagcccttactctacatagagacaggcagaactttcttggc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtttttagaggagacttagcccttactctacatagagacaggcagaactttcttggc 320

                                                                       
Query: 121 ctcaggcaaagggcagggattaggggataattcactagatataaacaacttaaatgagca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ctcaggcaaagggcagggattaggggataattcactagacataaacaacttaaatgagca 380

                                                                       
Query: 181 ggcctaaaggattagcctcccactaaagtccacaaaagctcgccctcctttgtaggcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctaaaggattagcctcccactaaagtccacaaaagctcgccctcctttgtaggcttc 440

                                                                       
Query: 241 tgctggattccagatgagatccttgcgcctggcaaactctcaaaaggagcccttagatgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tgctggattccagatgagatccttgcgcctggcaaactctcaaaaggagctcttagatgt 500

                                                                       
Query: 301 agctattgaacacactcctatgtcctacttactccttctgggtgagctcaggaccctgag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 agctattgaacacactcctatgtcctacttactccttctgggtgagctcaggacactgag 560

                              
Query: 361 ctatttatttgtatttttt 379
           |||||||||||||||||||
Sbjct: 561 ctatttatttgtatttttt 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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