Query= MSMg01no357_k12.b1 MSMg01no357_k12.b1 CHROMAT_FILE:
MSMg01no357_k12.b1 PHD_FILE: MSMg01no357_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:42 2005
(504 letters)
>mm_chr1_168062323_168063224
Length = 902
Score = 779 bits (403), Expect = 0.0
Identities = 419/425 (98%), Gaps = 2/425 (0%)
Strand = Plus / Minus
Query: 80 aaataattctagggctgggtgggtggctctgaggttaagagcaagagttgctcttgcaga 139
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 902 aaataattctagggctgggtaggtggctctgaggttaagagcatgagttgctcttgcaga 843
Query: 140 ggacccaagttagattcctagcactcacatggtggctcacagccattcattgccccagtt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggacccaagttagattcctagcactcacatggtggctcacagccattcattgccccagtt 783
Query: 200 ccagggattcatcaggtatgcatgtggttcacatacatgcttgctagcaaaaacattcat 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ccagggattcatcaggtatgcatgtggttcacatacatgcttgctagcaaaaacattcat 723
Query: 260 atgcattcaagtaaaataaatctaaaaaaaaatctaaggtgccaaattaaaccacctccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atgcattcaagtaaaataaatctaaaaaaaaatctaaggtgccaaattaaaccacctccg 663
Query: 320 tacaaccttatataatatcttccacttccccaaagttcagtgagcctaggctatctcgtg 379
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 662 tacaacct--tataatatcttccacttccccaaagttcagtgagcctgggctatctcgtg 605
Query: 380 aactcagtgcctctctcccaaacacaatcagcacaatctatgatggacatgatcaggtag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aactcagtgcctctctcccaaacacaatcagcacaatctatgatggacatgatcaggtag 545
Query: 440 ggaagggaactttccatgattcttagctcccccacacccatcacacaatgcagaacgtga 499
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 544 ggaagggaactttccatgattcttagctcccccacccccatcacacaatgcagaacgtga 485
Query: 500 tgcct 504
|||||
Sbjct: 484 tgcct 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 902
Length adjustment: 10
Effective length of query: 494
Effective length of database: 892
Effective search space: 440648
Effective search space used: 440648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_k12.g1 MSMg01no357_k12.g1 CHROMAT_FILE:
MSMg01no357_k12.g1 PHD_FILE: MSMg01no357_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:42 2005
(445 letters)
>mm_chr1_167859683_167860527
Length = 845
Score = 826 bits (427), Expect = 0.0
Identities = 442/449 (98%), Gaps = 4/449 (0%)
Strand = Plus / Plus
Query: 1 agggagaagccccaggatctttaggagttcaaggccagcttttttttttttttt----aa 56
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 197 agggagaagccccaggatctttaggagttcaaggccagctttttttttttttttttttaa 256
Query: 57 atttatataaagtgttccaggccaatcactgtttcttaaaacaaacaaggacacaacaca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atttatataaagtgttccaggccaatcactgtttcttaaaacaaacaaggacacaacaca 316
Query: 117 gaaagtgactgtgtaaactgacagttctcagctctatgagaaggatctattacacatccc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaagtgactgtgtaaactgacagttctcagctctatgagaaggatctattacacatccc 376
Query: 177 atattcttacaaggcgagtaattcacaaagttcaccaagtgtcccagcaagaatgtattt 236
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atattctcacaaggcgagtaattcacaaagttcaccaagtgtcccagcaagaatgtattt 436
Query: 237 tatacagttctagaaatgactttgggtttgaacacataatatgttgcttaaattttcaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatacagttctagaaatgactttgggtttgaacacataatatgttgcttaaattttcaat 496
Query: 297 tttatgtattatagttcatgagaaaaaccttacacaggtgctagtctaaacttgccttta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttatgtattatagttcatgagaaaaaccttacacaggtgctagtctaaacttgccttta 556
Query: 357 tttcttctctggttttatactttaactccctagtctttgaaataatatctaacttgtcat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttcttctctggttttatactttaactccctagtctttgaaataatatctaacttgtcat 616
Query: 417 atgactttaaatgaaatcacataatatgc 445
|||| |||||||||||||| |||||||||
Sbjct: 617 atgaatttaaatgaaatcagataatatgc 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
