BAC Information

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BAC

Clone NameMSMg01-357K13
Chromosome1 (Build37)
Map Location 194,195,512 - 194,264,481
singlet/doubletdoublet
Overlap geneKcnh1
Upstream genePpp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357K13.T7 (MSMg01no357_k13.b1)MSMg01-357K13.TJ (MSMg01no357_k13.g1)
ACCAG467504AG467505
length734757
length of high quality
(start - end)		557 (63 - 619)500 (73 - 572)
definitionCHROMAT_FILE: MSMg01no357_k13.b1 PHD_FILE: MSMg01no357_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:43 2005CHROMAT_FILE: MSMg01no357_k13.g1 PHD_FILE: MSMg01no357_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,195,512 - 194,196,068)(194,263,982 - 194,264,481)
sequence
ATACCTCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTTATTCCACTCTCCCCCTCCTTGTGGGTTCTGTTGTTCGTGCACAC
TCAGTAATGATTATGTGTCTTCAAGAAGAATTGGGACATTTATAACACAT
AATGTGCCATCTGTTCTCAGCACAGTGTCTAAAGGACCTCTATAAGCCAT
AAACTACATAAAATCCAAAGATGGTCAAGGGATAGAAATGGTGTAGTAAA
ACAGCCAATTTGTATGCCTGGTTTTTAATTCAAGAAAACTATGGAGTAGA
CTCAATTACTTATACATATAATTAATATCTTGCATTTGTATATTTTGTTA
CTTGGGTATTAGCAAAAGAAAAGAGGTCATCCATTCACTCATTATCATGC
AATCACATGATTTTACAGTCTTTTACAGGAATCGCAGTGGGCAGGATCTT
ACTCTCCAAGGCTCCACCCTCTGGCGGGAAAAGCAGAATATCACATAAGT
AATGATTGCCAGCCCAGTGGTAGGAGGGATTTCAGTGGATGCCTTTTCAG
AAGCTCAGAGGAATTGTCAGACTCTGTGTGAAATAAATCCTACAGGCAGT
TCAAGGATAAAACGGGAGCAGACCAGGGAGGGGCCTTTGGCATTGCCGCT
GCTGGGGTTATGGGAACAGGTAGAACCCTGAATATACTCCACTTCACACT
AAAAGAATGTACCCCTAGTTTGCCCTTCTAATGG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTCTCCTATCCCTTATTCCATTTGCA
CTTTAGCAGCTGACAGGACACTTGAATTCCTAAACAGAAATGCACTTGGC
TAAGCAATACATCCTAGACTGGCTCTTTATCTTCAGCAGTGGCTATGGTA
CAAGTAGCACATATGTTGATAGCTTGATCTCAAAGTGCCCTGTACCTACC
ATGTGTGAGGAAATGTACTCAGCTCTCTGTCATCCCATCCAATAGTACCA
TTTGGGGGAGGCAGTATGAACCCACAGACCAGAAAGAGCCATTCTTGTTC
AGTGCTCACCAGTCCCTACCCACGGCTGGCAAGTGGCAGAGCTTAGCCAT
GAGGTGACATTTCCTAGATTCAAATTCATCCCAGAACTTCTGTTTTCCCA
GAAGCAGAAGATCTAGCCTGGCCGTGCACTGTGAGCTGGCATTGGCATAA
TGAAGAGTGACCCCTTAGGCTTCCCAGGGACCATTGTGGACTCTACGTTT
GCTGGGGTCCTGGCAAGAGCAGGACCCAGGAAAGACTGCACAGGTCCTCA
GCAGTCCCTCTTGGTCCTGCTGAGGGGAAAGAGGCTGATTTTGAATTATA
TTTTGCTTGCTCACAAAATATAGTGGTGATCCCATCCTCGGGACCCTCGG
CCACCTTTGAATTCTGGGACCTTGAATTTCTTATCCCCCCTGGCCTGAGA
ATTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_k13.b1 MSMg01no357_k13.b1 CHROMAT_FILE:
MSMg01no357_k13.b1 PHD_FILE: MSMg01no357_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:43 2005
         (557 letters)



>mm_chr1_194195312_194196268
          Length = 957

 Score = 1069 bits (553), Expect = 0.0
 Identities = 556/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctccccctccttgtgggttctgttgttcgtgcacactcagtaatgattatgtgtcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctccccctccttgtgggttctgttgttcgtgcacactcagtaatgattatgtgtcttc 260

                                                                       
Query: 61  aagaagaattgggacatttataacacataatgtgccatctgttctcagcacagtgtctaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaagaattgggacatttataatacataatgtgccatctgttctcagcacagtgtctaa 320

                                                                       
Query: 121 aggacctctataagccataaactacataaaatccaaagatggtcaagggatagaaatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacctctataagccataaactacataaaatccaaagatggtcaagggatagaaatggt 380

                                                                       
Query: 181 gtagtaaaacagccaatttgtatgcctggtttttaattcaagaaaactatggagtagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagtaaaacagccaatttgtatgcctggtttttaattcaagaaaactatggagtagact 440

                                                                       
Query: 241 caattacttatacatataattaatatcttgcatttgtatattttgttacttgggtattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattacttatacatataattaatatcttgcatttgtatattttgttacttgggtattag 500

                                                                       
Query: 301 caaaagaaaagaggtcatccattcactcattatcatgcaatcacatgattttacagtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaagaaaagaggtcatccattcactcattatcatgcaatcacatgattttacagtctt 560

                                                                       
Query: 361 ttacaggaatcgcagtgggcaggatcttactctccaaggctccaccctctggcgggaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacaggaatcgcagtgggcaggatcttactctccaaggctccaccctctggcgggaaaa 620

                                                                       
Query: 421 gcagaatatcacataagtaatgattgccagcccagtggtaggagggatttcagtggatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaatatcacataagtaatgattgccagcccagtggtaggagggatttcagtggatgc 680

                                                                       
Query: 481 cttttcagaagctcagaggaattgtcagactctgtgtgaaataaatcctacaggcagttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttttcagaagctcagaggaattgtcagactctgtgtgaaataaatcctacaggcagttc 740

                            
Query: 541 aaggataaaacgggagc 557
           |||||||||||||||||
Sbjct: 741 aaggataaaacgggagc 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_k13.g1 MSMg01no357_k13.g1 CHROMAT_FILE:
MSMg01no357_k13.g1 PHD_FILE: MSMg01no357_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:43 2005
         (500 letters)



>mm_chr1_194263782_194264681
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctcctatcccttattccatttgcactttagcagctgacaggacacttgaattccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agttctcctatcccttattccatttgcactttagcagctgacaggacacttgaattccta 641

                                                                       
Query: 61  aacagaaatgcacttggctaagcaatacatcctagactggctctttatcttcagcagtgg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aacagcaatgcacttggctaagcaatacatcctagactggctctttatcttcagcagtgg 581

                                                                       
Query: 121 ctatggtacaagtagcacatatgttgatagcttgatctcaaagtgccctgtacctaccat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctatggtacaagtagcacacatgttgatagcttgatctcaaagtgccctgtacctaccat 521

                                                                       
Query: 181 gtgtgaggaaatgtactcagctctctgtcatcccatccaatagtaccatttgggggaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtgtgaggaaatgtactcagctctctgtcatcccatccaatagtaccatttgggggaggc 461

                                                                       
Query: 241 agtatgaacccacagaccagaaagagccattcttgttcagtgctcaccagtccctaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agtatgaacccacagaccagaaagagccattcttgttcagtgctcaccagtccctaccca 401

                                                                       
Query: 301 cggctggcaagtggcagagcttagccatgaggtgacatttcctagattcaaattcatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cggctggcaagtggcagagcttagccatgaggtgacatttcctagattcaaattcatccc 341

                                                                       
Query: 361 agaacttctgttttcccagaagcagaagatctagcctggccgtgcactgtgagctggcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agaacttctgttttcccagaagcagaagatctagcctggccgtgcactgtgagctggcat 281

                                                                       
Query: 421 tggcataatgaagagtgaccccttaggcttcccagggaccattgtggactctacgtttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tggcataatgaagagtgaccccttaggcttcccagggaccattgtggactctacgtttgc 221

                               
Query: 481 tggggtcctggcaagagcag 500
           ||||||||||||||||||||
Sbjct: 220 tggggtcctggcaagagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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