BAC Information

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BAC

Clone NameMSMg01-357L03
Chromosome1 (Build37)
Map Location 131,612,000 - 131,783,549
singlet/doubletdoublet
Overlap geneThsd7b, LOC100042745, LOC100042740
Upstream geneLOC100042732
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357L03.T7 (MSMg01no357_l03.b1)MSMg01-357L03.TJ (MSMg01no357_l03.g1)
ACCAG467532AG467533
length744748
length of high quality
(start - end)		462 (45 - 506)470 (76 - 545)
definitionCHROMAT_FILE: MSMg01no357_l03.b1 PHD_FILE: MSMg01no357_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:45 2005CHROMAT_FILE: MSMg01no357_l03.g1 PHD_FILE: MSMg01no357_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,612,000 - 131,612,450)(131,783,080 - 131,783,549)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTATTTCTAAATAACATTTCATGAATTTCCATTTTTGACAACA
ATGGGAATATTCTATTTTGATGGCCATTTCTAACTTGGTTGCATTTGATC
CTCAGTAAAACATGACTGAATTCTCTTCTTTTTTTTCATTTTTTTAAATA
TTATTTTTATTAGATATTTTCTTCATTTACATTTCCAATGCTATCCCAAA
AGTCCCCCATAGCCTCCCCCACACTCCCCTACTCACTCACTCCCACTTAT
TGGCCCTGGCGTTCCCCTATACTGAGGCATATAAAGTTTGCAAGACCAAT
GGGCCTCTTTTTCCACTTAACTGTAGAGTTTCTCTGACTTTGACATTGTT
GTCTGTCTCTCTATATCTCTCTGCCTCTCTGTCTTCCTCTGTCTCTTTAT
TTCTTCCTTATACTTCCCCCTCCCTCACTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTATATCCCATCCCCCCTTTATTCTTCTCCTCC
CTTCCCTTATTCATCTTATTCTTCTCTTTCCGCCCTTTCTTCATTCCTCC
TTTTATTATCCCTTTTCCTTACTTTTCCAATCCCATTTTTATCCCCCTTA
CCTCCTTTTCATCCTTTCTAACCCTCCACTTCTTTCATCCCAACTACTTA
CTCATCACTATATCCCTCATTTCTCCTCCCCTTTTCCCCCCTTG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGATCTATGATTGTCAGTTCT
GATCTTCCACACTGGCATTGTGAAAGATGTTTAGAGTCAAAACATAACTT
GAATAGGATAGAGAAAAGATGACCTTCTATAAAATTAATAGGGCTCAACA
TGACCTTTATGAAAGATGCAGTGAAAAAACCCCACAGAATTATTTTAGTT
AATATTAGTATTTTTGATGACAAGGTTGTTATTGAGCTAGGGATGAAAGA
TCTGAATCAATTCTTAAATTCAAACATTTTAAGCCATCCTTGATACATTG
CTGTTTATTAAAAAAGAAAAGAAAAAGACAAAAGTCAAATGTAAGTTGTT
CCATGGATAAGAAATGCTGAATGAACCTGAAGTGTTTTTTAAGTATGGAG
ATTTGAGTTTCTGGATATTGTTTTATTCAGCTGAAGTCCATGCCTTCCTT
GGGTATATGAAGGCCTTTCTTTCCACCATCATTGGCAAAGAAAATGGCCT
GGAGCCTTTTAAAAATCATTAAGTATAAAACCCACCATTCCTGACATTTT
TAGGAAAGACAGAATTTTTAGGGTTGCTGTGTTGCGGCCTGAGTAATCCC
ATCCTCCACATCCATGGTTTGAATATCCTATCCCCAATGTGATGAAATTT
GAAAATGTGGCCCTTGGGAAGACATTTAACGTTTTATTGATCTTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_l03.b1 MSMg01no357_l03.b1 CHROMAT_FILE:
MSMg01no357_l03.b1 PHD_FILE: MSMg01no357_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:45 2005
         (462 letters)



>mm_chr1_131611797_131612658
          Length = 862

 Score =  864 bits (447), Expect = 0.0
 Identities = 450/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttttatttctaaataacatttcatgaatttccatttttgacaacaatgggaa 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttttaattctaaataacatttcatgaatttccatttttgacaacaatgggaa 263

                                                                       
Query: 64  tattctattttgatggccatttctaacttggttgcatttgatcctcagtaaaacatgact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattctattttgatggccatttctaacttggttgcatttgatcctcagtaaaacatgact 323

                                                                       
Query: 124 gaattctcttcttttttttcatttttttaaatattatttttattagatattttcttcatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattctcttcttttttttcatttttttaaatattatttttattagatattttcttcatt 383

                                                                       
Query: 184 tacatttccaatgctatcccaaaagtcccccatagcctcccccacactcccctactcact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacatttccaatgctatcccaaaagtcccccatagcctcccccacactcccctactcact 443

                                                                       
Query: 244 cactcccacttattggccctggcgttcccctatactgaggcatataaagtttgcaagacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactcccacttattggccctggcgttcccctatactgaggcatataaagtttgcaagacc 503

                                                                       
Query: 304 aatgggcctctttttccacttaactgtagagtttctctgactttgacattgttgtctgtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgggcctctttttccacttaactgtagagtttctctgactttgacattgttgtctgtc 563

                                                                       
Query: 364 tctctatatctctctgcctctctgtcttcctctgtctctttatttcttccttatacttcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctctatatctctctgcctctctgtcttcctctgtctctttatttcttccttatacttcc 623

                                          
Query: 424 ccctccctcactgtgtgtgtgtgtgtgtgtg 454
           |||||||||||||||||||||||||||||||
Sbjct: 624 ccctccctcactgtgtgtgtgtgtgtgtgtg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_l03.g1 MSMg01no357_l03.g1 CHROMAT_FILE:
MSMg01no357_l03.g1 PHD_FILE: MSMg01no357_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:46 2005
         (470 letters)



>mm_chr1_131782880_131783749
          Length = 870

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagatctatgattgtcagttctgatcttccacactggcattgtgaaagatgtttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctcagatctatgattgtcagttctgatcttccacactggcattgtgaaagatgtttaga 611

                                                                       
Query: 61  gtcaaaacataacttgaataggatagagaaaagatgaccttctataaaattaatagggct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 610 gtcaaaacataacttgaataggatagagaaaagatgaccttctataaaattaatagggtt 551

                                                                       
Query: 121 caacatgacctttatgaaagatgcagtgaaaaaaccccacagaattattttagttaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caacatgacctttatgaaagatgcagtgaaaaaaccccacagaattattttagttaatat 491

                                                                       
Query: 181 tagtatttttgatgacaaggttgttattgagctagggatgaaagatctgaatcaattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tagtatttttgatgacaaggttgttattgagctagggatgaaagatctgaatcaattctt 431

                                                                       
Query: 241 aaattcaaacattttaagccatccttgatacattgctgtttattaaaaaagaaaagaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaattcaaacattttaagccatccttgatacattgctgtttattaaaaaagaaaagaaaa 371

                                                                       
Query: 301 agacaaaagtcaaatgtaagttgttccatggataagaaatgctgaatgaacctgaagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agacaaaagtcaaatgtaagttgttccatggataagaaatgctgaatgaacctgaagtgt 311

                                                                       
Query: 361 tttttaagtatggagatttgagtttctggatattgttttattcagctgaagtccatgcct 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 310 tttttaagtatggagatttgagtttctggatattgttttagtcagctgaagtccatgcct 251

                                                             
Query: 421 tccttgggtatatgaaggcctttctttccaccatcattggcaaagaaaat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tccttgggtatatgaaggcctttctttccaccatcattggcaaagaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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