BAC Information

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BAC

Clone NameMSMg01-357L14
Chromosome1 (Build37)
Map Location 144,364,666 - 144,500,849
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357L14.T7 (MSMg01no357_l14.b1)MSMg01-357L14.TJ (MSMg01no357_l14.g1)
ACCAG467553AG467554
length753770
length of high quality
(start - end)		555 (43 - 597)452 (74 - 525)
definitionCHROMAT_FILE: MSMg01no357_l14.b1 PHD_FILE: MSMg01no357_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:48 2005CHROMAT_FILE: MSMg01no357_l14.g1 PHD_FILE: MSMg01no357_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,364,666 - 144,365,216)(144,500,398 - 144,500,849)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAATTATTAATCACACAGAGATCCAAAATTTGGAGATGTAAAGACAC
GAATCACACTGTGTTCATTTATTCCAGCAGAACAACTAAAGTGGGATAAT
GCAAGGAAGGATGGGATTCAAAACTAAGATTAACTATCAGACATGCAGAG
GGGGATGCTACTTACATAAAGTAAGAAGCCTCATGACTCCTCAATGAACA
TTTGGAATTACAGTCTTCCTAGGAAAAAGATGACAAACACCAGTTTTTTA
CTTATTTATCAAACCAGACGTATATAATCACTTACTCTCTCTTCCTAATA
GAAAGGGGGAAGTGGTAAAGCCTGCAGTAATTTTCTGACATCTCTCTCCT
TATCTCAGCAGCTCTAACTTCTCTGCTCAGTTTCTCAATCTCTGGGTCAG
AGTTTGCCTAGAGATAGAAAGCAGGGCCATCAGGGAAATCATTTTGAGAG
GCTCTCTTTACTGAATGCTCCACAGGCTCTGTTCTCCTAGCGATTACACT
CTTGATCTTCCTTAGTAAAAATCTCACATAATTTCTCTTTTTCCAGAACA
CACAACTCATGGTAGTATAAGACAGACTTCTACTCAATTAGTCTTAAAGT
AAGATCACCTAACTCCCATTGTGGAGAAATATGCTGACTATCCATGTGAG
AGAAACCTTTTTTACTCCCCACGTGAAATGAAAATAAGAATTCCTCCTGG
GAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTAGAGCACCCATGAATAAATAAG
CTGCTACAGAATCACTTGATTGCATTGTCAATGATCTTTCTTGTCAGAAT
ATGACAATGTAATGAGGTAAAGGTAAGATGTACTTTGTTTAAAAAGAATA
TTAAAATGTCTTAGCATACTATCAATGTAATGTACAGTGTTAATCTATGT
TTACTTTGAAAGCTTCTGCTATTGTTCATGTAGATTATCTCAGAATATCA
TTTCAACTGTAAAATTATTTAGATTAAATAAGTCTGTGGTTTTTCATTGC
AGGTGGTCACATATGTGTGTATTTTGGTGGCTACTTGCTTTAGGAAGACT
CAGTCCACTGTCAGTGACAGTATTACTTGTACAGTGTTTCCAAAGCTACA
TGAGAAAGGGGCAAACTATCTAAAGCCAAACCACATAGATTGAATATATT
CATTTCTCTCTGCCATTGACTATAGTTTTGATGTCATTGGCTGCTTTAGT
TCCTCTTTTGACTTTTGTAATTTCAGGGATTAACTTTAACCTCTAATTAT
TAAGTAAATAAACTCTTTCCTCTTACCAAAAGATCTTGGTTAGAATGTTT
GCCCCCACTTCCCACACCAAATAAAAAAGTTCCCTTATATAAAAACCCTT
TAAAATTTTGGTTTCCCAATTTAAAACTCCCTTAAAAACTCTTTTTTTCC
CGGCTCTTTATTATACAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_l14.b1 MSMg01no357_l14.b1 CHROMAT_FILE:
MSMg01no357_l14.b1 PHD_FILE: MSMg01no357_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:48 2005
         (555 letters)



>mm_chr1_144364462_144365416
          Length = 955

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaattattaatcacacagagatccaaaatttggagatgtaaagacacgaatca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaattaataatcacacagagatccaaaatttggagatgtaaagacacgaatca 264

                                                                       
Query: 65  cactgtgttcatttattccagcagaacaactaaagtgggataatgcaaggaaggatggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactgtgttcatttattccagcagaacaactaaagtgggataatgcaaggaaggatggga 324

                                                                       
Query: 125 ttcaaaactaagattaactatcagacatgcagagggggatgctacttacataaagtaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaaaactaagattaactatcagacatgcagagggggatgctacttacataaagtaaga 384

                                                                       
Query: 185 agcctcatgactcctcaatgaacatttggaattacagtcttcctaggaaaaagatgacaa 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcctcatgactcctcaaagaacatttggaattacagtcttcctaggaaaaagatgacaa 444

                                                                       
Query: 245 acaccagttttttacttatttatcaaaccagacgtatataatcacttactctctcttcct 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 acaccagttttttacttatttatcaaaccagacgtatacaatcacttactctctcttcct 504

                                                                       
Query: 305 aatagaaagggggaagtggtaaagcctgcagtaattttctgacatctctctccttatctc 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 aatagaaagggggaagtggtaaagcctgcagtaatcttctgacatctctctccttatctc 564

                                                                       
Query: 365 agcagctctaacttctctgctcagtttctcaatctctgggtcagagtttgcctagagata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcagctctaacttctctgctcagtttctcaatctctgggtcagagtttgcctagagata 624

                                                                       
Query: 425 gaaagcagggccatcagggaaatcattttgagaggctctctttactgaatgctccacagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaagcagggccatcagggaaatcattttgagaggctctctttactgaatgctccacagg 684

                                                                       
Query: 485 ctctgttctcctagcgattacactcttgatcttccttagtaaaaatctcacataatttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctctgttctcctagcgattacactcttgatcttccttagtaaaaatctcacataatttct 744

                      
Query: 545 ctttttccaga 555
           |||||||||||
Sbjct: 745 ctttttccaga 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_l14.g1 MSMg01no357_l14.g1 CHROMAT_FILE:
MSMg01no357_l14.g1 PHD_FILE: MSMg01no357_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:48 2005
         (452 letters)



>mm_chr1_144500198_144501049
          Length = 852

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttagagcacccatgaataaataagctgctacagaatcacttgattgcattgtcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttttagagcacccatgaataaataagctgctacagaatcacttgattgcattgtcaatg 593

                                                                       
Query: 61  atctttcttgtcagaatatgacaatgtaatgaggtaaaggtaagatgtactttgtttaaa 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atcttacttgtcagaatatgacaatgtaatgaggtaaaggtaagatgtactttgtttaaa 533

                                                                       
Query: 121 aagaatattaaaatgtcttagcatactatcaatgtaatgtacagtgttaatctatgttta 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aagagtattaaaatgtcttagcatactatcaatgtaatgtacagtgttaatctatgttta 473

                                                                       
Query: 181 ctttgaaagcttctgctattgttcatgtagattatctcagaatatcatttcaactgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctttgaaagcttctgctattgttcatgtagattatctcagaatatcatttcaactgtaaa 413

                                                                       
Query: 241 attatttagattaaataagtctgtggtttttcattgcaggtggtcacatatgtgtgtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attatttagattaaataagtctgtggtttttcattgcaggtggtcacatatgtgtgtatt 353

                                                                       
Query: 301 ttggtggctacttgctttaggaagactcagtccactgtcagtgacagtattacttgtaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttggtggctacttgctttaggaagactcagtccactgtcagtgacagtattacttgtaca 293

                                                                       
Query: 361 gtgtttccaaagctacatgagaaaggggcaaactatctaaagccaaaccacatagattga 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 292 gtgtttccaaagctacatgagaaaggggcaaactatctgaagccaaaccacatagattga 233

                                           
Query: 421 atatattcatttctctctgccattgactatag 452
           ||||||||||||||||||||||||||||||||
Sbjct: 232 atatattcatttctctctgccattgactatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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