XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTTTCACCTTTCTCTGTTCCTCTTCTCTCTCTTCTTGTAGCGTTAGTA
ACTTAGAAAAATTGCAGTATAGCCATAAAATTCAGGCTTTTCTGTGTGTA
GTAAAAGTAATTGCATTGAATATAAAACACAGTGGCAAAAAAATGGAGAT
GTACACATAGAACAACTGGAAAATAAAATTTCTCACTAATATTATAATTA
ATCAGTAATTACTTATTGTGGTTTTATAGTGAATATGTTTAGATACTAAT
AAACGGAAGGCATAGTTTCTACAAAATGGATATCTGGACAGGTCTAGACA
TTATTGTAACAAAGGTCAACCCCAATAGAAGACAGCACCCTGTCACAGTC
TTCAGAAAAATGAATGAGCATGCTTGTAAATATCTAATAATAATAATCAT
AATTTGACACATGAATAAGACATTTCATCATCCGTTGTCTTAGTAGACAA
TGACAAAGTCCCTGAGTTGGGATCCCTGGAAAAGAGGACTGGGATTTTGC
ATTTTCCCAAGCACTTCAGAAAGCTTTTCTTTTTTTCTTGGGGNTTTTGG
GTTAACCAGGGCCTTAGAGCAGCCTAGGAATGTATTTTTGCATCTCCCAC
CAACAGCGAAACATTTGATACACTGTGCCTTTAATAAAGATTGCCTTATG
GGTAAACAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTAAGGAAGTTACCTATTCAGTAACTAATTA
AGCATTACAAAGGACCAAGCCAGAATAGCTCAGGGCTAGTCTGCAGTGTG
TTTACCTTAGGCAGTAGCCAGTCTTACCCAAACACAATGGCCTATCGAAT
AGGTGGGTTTACCATGAGAAAAGTTAGGGAATCTCACTGAGACAGGTTCT
TCACTAGACCCAAAGAAATCAGGTAGAACTATAGAGCAGAAATAAATTTT
ATGCCTCAGTCCAGCCTCTTTTTTTAAAATATTAATAACAGGGAGGAAAT
TGTGACCTCCACCCAGCCTGAAGCTGGCTGAACCAGACCTTGACCTTGCT
GCCACTAAGAAGATCATCTAGGGTGGAGCCTCCCAAGATCATTCTATTTT
TCAGCCACTGTTGCTGCTACCTGCTGGGAGGCTGCCTAGCTATTCCAGAG
ACTACACCCTATCCTGCACATGGTCACCTGCAGCTGGGCTCCAAGAATGA
ACTGGAGGGAACGGCCCTCCCCTCCCCCCTTTATAAGCGAAGTCACCATT
AAACATTTTGAGCCTTTAACAGAATATTGTCTTGGCTCCCCTTCTCTTTT
GTTAACCAATATTCCTTTTCTTTCTAGGGCCAAACTGGCACTTTCAGGGG
TACCCCCTCCCTG

Query= MSMg01no358_b17.b1 MSMg01no358_b17.b1 CHROMAT_FILE:
MSMg01no358_b17.b1 PHD_FILE: MSMg01no358_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:17 2005
         (565 letters)



>mm_chr1_7421464_7422434
          Length = 971

 Score =  880 bits (455), Expect = 0.0
 Identities = 522/547 (95%), Gaps = 6/547 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttttcacctttctctgttcctcttctctctcttcttgtagcgttagtaactt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 751 gaattctcttttcacctttctctgttcctcttctctctcttcttgtagcgttaggaactt 692

                                                                       
Query: 65  agaaaaattgcagtatagccataaaattcaggcttttctgtgtgtagtaaaagtaattgc 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agaaaatttgcagtatagccataaaattcaggcttttctgtgtgtagtaaaagtaattgc 632

                                                                       
Query: 125 attgaatataaaacacagtggc---aaaaaaatggagatgtacacatagaacaactggaa 181
           ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||
Sbjct: 631 attgaatataaaacacagtggcaaaaaaaaaatggagatgtacacatagagcaactggaa 572

                                                                       
Query: 182 aataaaatttctcactaatattata---attaatcagtaattacttattgtggttttata 238
           |||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||
Sbjct: 571 aataaaatttctcactaatattataattattaatcagtaattacttattgtagttttata 512

                                                                       
Query: 239 gtgaatatgtttagatactaataaacggaaggcatagtttctacaaaatggatatctgga 298
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 511 gtgaatatgtttaaatactaataaacggaaggcatagtttctacaaaatgaatatctgga 452

                                                                       
Query: 299 caggtctagacattattgtaacaaaggtcaaccccaatagaagacagcaccctgtcacag 358
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 451 caggtctagccattattgtaacaaaggtcaaccccaacagaagacagcaccctgtcacag 392

                                                                       
Query: 359 tcttcagaaaaatgaatgagcatgcttgtaaatatctaataataataatcataatttgac 418
           |||||||||||| ||||||| | |||| |||| ||| |||||||||||||| ||||||||
Sbjct: 391 tcttcagaaaaacgaatgagtaggcttttaaacatcgaataataataatcagaatttgac 332

                                                                       
Query: 419 acatgaataagacatttcatcatccgttgtcttagtagacaatgacaaagtccctgagtt 478
           |||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 331 acatgaataagacatttcttcacccattgtctttgtagacaatgacaaagtccctgagtt 272

                                                                       
Query: 479 gggatccctggaaaagaggactgggattttgcattttcccaagcacttcagaaagctttt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gggatccctggaaaagaggactgggattttgcattttcccaagcacttcagaaagctttt 212

                  
Query: 539 ctttttt 545
           |||||||
Sbjct: 211 ctttttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 971
Length adjustment: 10
Effective length of query: 555
Effective length of database: 961
Effective search space:   533355
Effective search space used:   533355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)