BAC Information

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BAC

Clone NameMSMg01-358D05
Chromosome1 (Build37)
Map Location 101,398,621 - 101,399,014
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco6d1, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358D05.T7 (MSMg01no358_d05.b1)MSMg01-358D05.TJ (MSMg01no358_d05.g1)
ACCAG467913AG467914
length1,245726
length of high quality
(start - end)
---469 (65 - 533)
definitionCHROMAT_FILE: MSMg01no358_d05.b1 PHD_FILE: MSMg01no358_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:24 2005CHROMAT_FILE: MSMg01no358_d05.g1 PHD_FILE: MSMg01no358_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGAGGGATTGTGTTTTGGGTCGTACTTTTCGCCGCGGACCCGCGGCGA
ACTCAANATNACTGGTGCGTCTGGTCGTCTGGCTCGAGCTATCGATTGTT
GTGTCGTTTACCCTGTCCGCGGGATATGCGGTCCGATTTTTGTAATTACA
GACAGTGAAATATATTCGCTTTTTCCGCTATGTCCTCCCGGCTATTGCGA
TGTTCCGCGCGAATTAGTCTATTACCCCATCACCGCCGGGTTCGCCGTTG
CACCGAGATAATGGCGAATAATATAGAGTGAGTAATATGTTCTTCACGCC
CTAGTAATATTAAAAAGAACTTGCTGCGTGTGCGGTGTCTTCGTGATTGT
CTCGGATGTCTTATTATGTCCACGCCACGCGATGTGCAGAGGAACCGTGG
AATAAGAATATGAACTGTATAGAGTGTACCACAATTGACGCGCGTGGATT
GAGAGACGGCCGCAGCCTTATGTGCACCTTTGTATACGCTTAATGAGTAT
GTCTGATGTAAATCGACATTGTTATAGGTCCGCGCCTCGCCCACATTGTG
ATTCAGCACACTGTCGACCTTATTTCGCCCGCTTAGTGTTCCGGGCGCTG
GGTCTTATACGCATATACACCACACACTGTATCTCTTGGTGAACGATCTC
GTGATAGACGTCACCGAATGATCGTATCACACACAGACCATATAATCAGT
ACACACGATCTGCTCGTCGACGTGATCTTGGGACGGACGCAATATCTTGA
CTTCTCCTGTTCTCTTGTTGTCGATGTACTCGGCGGAGTACGAGAACATA
TACGATCTGACTCCACCCCCACGAGACCCGTATATACAGTCGCGCATATA
CTAGTCTTGATATGTACTGGCGCACACGCGTCATGTTATTTCGGCCCAGT
CTGTGAATATACGATATCCGCGCATGGATGATGGACGTCAGCACGACGCG
GTGATTCTACAGGTGTGGTCTCTTCGCGCGCGTTATTCGTCCCGCGCCGC
CTTCTCTCGTGTTAGTACGCGCTCTCCTCTACTATATAGTATATTTCTGC
CCGTGCTGTCTTTTGAGCCCGCCAGCCGGCGATTAATACCGTCGCGGCTA
AGATGATACGCACGCGTCACACATAGTANTGCCGGTCTTATATATTATCA
ACGTGGCATCTAATAACTACACGCCGATTTATACGTCGCAAACACTATAC
ATGCAGNCCCACCGTGTTTAGTGGTGTGTCTCATCGGTGCGATTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAGGAGCACATAAGTTATAGTTTGACAGCCCTCGG
GAGGTAGAGACAGGCAGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTAGAAAAA
CAAAGAAAAAAAGTTATAGTTTGAATGGGACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACGGATTCATATGTT
TTAATATTTAGTCCCCAGGAGGTGGTACTATTTGAAAGGCTGTGGACCCT
TTAAAGGGTAAAGCATTGAGGAGGAGCAATGAGGGTTTGGGGAAGGTGCA
TTACTAAGATCAGAGTTAAGGCTGTATAGCCTGCTCCACTACTTGCTAAT
CATACTTCGTGATTATAGAAACACCATGACCAGGCTACTCCTGCCTCCAT
GCTTTTCTTGCAATAATCTATGCACATGAACTATAAGCCCAAATTGGCCT
GGCTTTTAGTTGTTTTCTAAACCATCTTTCATGAGAGTAATGGAAGAACT
ACAATTAGAGGGTGTATTACCTTAACTCTGTAGGAATTTTTTAAATATGT
CCCTTTTTTGAACCCTGTTGATGTTGTGATTATTTTAATTTTGATTTTTA
TTGTTTTTTCCTAAGGTTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_d05.g1 MSMg01no358_d05.g1 CHROMAT_FILE:
MSMg01no358_d05.g1 PHD_FILE: MSMg01no358_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:24 2005
         (469 letters)



>mm_chr1_101398146_101399014
          Length = 869

 Score =  739 bits (382), Expect = 0.0
 Identities = 391/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 75  ctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgcctagaaa 134
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 869 ctggtctacaaagtgagttccaggacagacagggctacacagagaaaccctgcctagaaa 810

                                                                       
Query: 135 aacaaagaaaaaaagttatagtttgaatgggacacacacacacacacacacacacacaca 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aacaaagaaaaaaagttatagtttgaatgggacacacacacacacacacacacacacaca 750

                                                                       
Query: 195 cacacacacacacacacacacacacacacggattcatatgttttaatatttagtccccag 254
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 749 cacacacacacacacacacacacacacatggattcatatgttttaatatttagtccccag 690

                                                                       
Query: 255 gaggtggtactatttgaaaggctgtggaccctttaaagggtaaagcattgaggaggagca 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaggtggtactatttgaaaggctgtggaccctttaaagggtaaagcattgaggaggagca 630

                                                                       
Query: 315 atgagggtttggggaaggtgcattactaagatcagagttaaggctgtatagcctgctcca 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgagggtttggggaaggtgcattactaagatcagagttaaggctgtatagcctgctcca 570

                                                                       
Query: 375 ctacttgctaatcatacttcgtgattatagaaacaccatgaccaggctactcctgcctcc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 569 ctacttgctaatcatacttcgtgattatagaaacaccatgaccaggctattcctgcctcc 510

                                             
Query: 435 atgcttttcttgcaataatctatgcacatgaact 468
           ||||||||||||||||||||||||||||||||||
Sbjct: 509 atgcttttcttgcaataatctatgcacatgaact 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)