Query= MSMg01no358_d06.b1 MSMg01no358_d06.b1 CHROMAT_FILE:
MSMg01no358_d06.b1 PHD_FILE: MSMg01no358_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:24 2005
(565 letters)
>mm_chr1_181112603_181113564
Length = 962
Score = 1033 bits (534), Expect = 0.0
Identities = 554/562 (98%), Gaps = 3/562 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagggcacctgcgctggctgcacggtatatgcagacattttttgcaggttcttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagggcacctgcgctggctgcacggtatatgcagacattttttgcaggttcttt 263
Query: 64 ggaataagaagggttttgttaaatacaaccaaatattactttctttttgcaagatggtgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaataagaagggttttgttaaatacaaccaaatattactttctttttgcaagatggtgg 323
Query: 124 aagaaggagtctcacaaaagttggcctttgtccaatgcagtataaaattactcacaaatc 183
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagagggagtctcacaaaagttggcctttgtccaatgcagtataaaattactcacaaatc 383
Query: 184 tttacagttgacttctatagctaagacaaacaggagtcgttttctcttttcaaatactga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttacagttgacttctatagctaagacaaacaggagtcgttttctcttttcaaatactga 443
Query: 244 tttatagatgacttccaccaacactggaaataattagcagttaaggttaaggtcacaaaa 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttatagatggcttccaccaacactggaaataattagcagttaaggttaaggtcacaaaa 503
Query: 304 ggatttctaacatggcacaaaaggggaaaaaaataaaatcacaggaagggtatgtcaact 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 ggatttctaacatggcacaaaaggggaaaaaaataaaatcacaggaagggtatgtcaatt 563
Query: 364 tcatctctcttcgacatcgatcatgacggattactgtaggtgttttactctccacgagtt 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 tcatctctcttcgacatcgatcatgacggattactgtaggtattttactctccacgagtt 623
Query: 424 agacagcccatgacagaagctttcacacagaccaccatgcacactcccaatggcactctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacagcccatgacagaagctttcacacagaccaccatgcacactcccaatggcactctc 683
Query: 484 tccaagcaacaagcttttctatgaatcattttgtttgctcactgggaaaaaaaaaaaatg 543
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 tccaagcaacaagcctttctatgaatcattttgtttgctcactgggaaaaaaaaa---tg 740
Query: 544 aaagagccaaacgggaagcaag 565
||||||||||||||||||||||
Sbjct: 741 aaagagccaaacgggaagcaag 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 962
Length adjustment: 10
Effective length of query: 555
Effective length of database: 952
Effective search space: 528360
Effective search space used: 528360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_d06.g1 MSMg01no358_d06.g1 CHROMAT_FILE:
MSMg01no358_d06.g1 PHD_FILE: MSMg01no358_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:25 2005
(373 letters)
>mm_chr1_181263224_181263996
Length = 773
Score = 629 bits (325), Expect = 0.0
Identities = 356/373 (95%), Gaps = 13/373 (3%)
Strand = Plus / Minus
Query: 1 tcagaggaacgttgtaaatcattttttaagcatttctcttttttgtttttgttttgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcagaggaacgttgtaaatcattttttaagcatttctcttttttgtttttgttttgtttt 616
Query: 61 gtttgttttgtttcgagacagggtttctctgtatagccctggctgtcctggaattcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 615 gtttgttttgtttcgagacagggtttctctgtatagccctggctgtcctggaactcactt 556
Query: 121 tgtagacctggctggccttgaactcagaaatccgcctgcctctgcctccattttttaaaa 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtagacctggctggcctcgaactcagaaatccgcctgcctctgcctccattttttaaaa 496
Query: 181 ttctatttacaaatgagatagaaactgagaaatccaggtatttgctcaaaacaatgtacc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttctatttacaaatgaaatagaaactgagaaatccaggtatttgctcaaaacaatgtacc 436
Query: 241 actaataaggcacagtggtccaaaccccaagtttgatttctgaatttggcttctttttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 435 actaataaggcacagtggtccaaaccccaagtttgatttctgaatttggcttcttattac 376
Query: 301 attaaggtctatatttcagtctttctctatgacagactcgataatacaaaccaataatct 360
|||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 375 attaag---ta---------ctt-ctctatgacagactcgataatacaaaccaataatct 329
Query: 361 gtgcttgtctaaa 373
|||||||||||||
Sbjct: 328 gtgcttgtctaaa 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
