Query= MSMg01no358_j03.b1 MSMg01no358_j03.b1 CHROMAT_FILE:
MSMg01no358_j03.b1 PHD_FILE: MSMg01no358_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:52 2005
(472 letters)
>mm_chr1_82556407_82557278
Length = 872
Score = 373 bits (193), Expect = e-107
Identities = 276/307 (89%), Gaps = 13/307 (4%)
Strand = Plus / Minus
Query: 7 gaattctggtcattttaaatcaccatgaccgcttgtcactcctcacacccctaactgaaa 66
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 313 gaattgtggtcattttaaatcaccatgaccacttgtcactcctcacacccctaactgaaa 254
Query: 67 actttcttcttcttagcaagtctctttcctactttgatctttcttctttcttctttcctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actttcttcttcttagcaagtctctttcctactttgatctttcttctttcttctttcctc 194
Query: 127 ttctttc-tccttc-tccttc-tccttctccttctccttctccttctccttctccttctc 183
||||||| || ||| || ||| |||| ||||| ||||| ||||| ||||| |||||||||
Sbjct: 193 ttctttcctc-ttcctc-ttcctcctcctcctcctcctcctcctcctcctcctccttctc 136
Query: 184 cttctccttctccttctccttctccttctccttctccttctccttctccttctccttctc 243
|| ||||| ||||| |||||||| ||||| |||||||| ||||| ||||| ||||||
Sbjct: 135 ctcctcctcctcctcctccttcttcttcttcttctcctcctcctcctcct---ccttctt 79
Query: 244 cttctccttctccttctccttctccttctccttctccttctccttctccttctccttctc 303
||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| |
Sbjct: 78 cttctccttctccttctccttct--ttctccttctcctcctcctcctcctcctcct---c 24
Query: 304 cttctcc 310
|||||||
Sbjct: 23 cttctcc 17
Score = 143 bits (74), Expect = 2e-38
Identities = 137/158 (86%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 295 ctccttctccttctccttctccttctccttctccttctccttctccttctccttctcctt 354
||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||
Sbjct: 174 ctcctcctcctcctcctcctcctcctcctcctccttctcctcctcctcctcctcctcctt 115
Query: 355 cttcgtcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc-t 413
|||| ||||||||| || || || || || ||||||||||| ||||| ||||| |||| |
Sbjct: 114 cttcttcttcttctcctcctcctcctcctccttcttcttctccttctccttctccttctt 55
Query: 414 tcttctcctcctcctcctcctcctcctcctccttctcc 451
||| || |||||||||||||||||||||||||||||||
Sbjct: 54 tctccttctcctcctcctcctcctcctcctccttctcc 17
Score = 112 bits (58), Expect = 4e-29
Identities = 85/94 (90%), Gaps = 4/94 (4%)
Strand = Plus / Minus
Query: 383 ttcttc-ttcttc-ttcttcttc-ttcttcttcttctt-ctcctcctcctcctcctcctc 438
|||||| |||||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||
Sbjct: 213 ttcttctttcttctttcctcttctttcctcttcctcttcctcctcctcctcctcctcctc 154
Query: 439 ctcctccttctccttctcctcctcctccttctcc 472
|||||||| |||||||||||||||||||| ||||
Sbjct: 153 ctcctcctcctccttctcctcctcctcctcctcc 120
Score = 107 bits (55), Expect = 2e-27
Identities = 85/95 (89%), Gaps = 4/95 (4%)
Strand = Plus / Minus
Query: 377 ttcttc-ttcttc-ttcttcttc-ttcttcttcttctt-cttcttctcctcctcctcctc 432
|||||| |||||| ||| ||||| ||| ||||| |||| || || |||||||||||||||
Sbjct: 213 ttcttctttcttctttcctcttctttcctcttcctcttcctcctcctcctcctcctcctc 154
Query: 433 ctcctcctcctccttctccttctcctcctcctcct 467
|||||||||||||||||||| ||||||||||||||
Sbjct: 153 ctcctcctcctccttctcctcctcctcctcctcct 119
Score = 93.5 bits (48), Expect = 3e-23
Identities = 67/76 (88%), Gaps = 8/76 (10%)
Strand = Plus / Minus
Query: 403 cttcttcttcttcttctcctcctcctcctcctcctcct-c--ctccttctccttctcctc 459
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 117 cttcttcttcttcttctcctcctcctcctcctccttcttcttctccttctccttctcct- 59
Query: 460 ctc---ctccttctcc 472
|| ||||||||||
Sbjct: 58 -tctttctccttctcc 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 151
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 5
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_j03.g1 MSMg01no358_j03.g1 CHROMAT_FILE:
MSMg01no358_j03.g1 PHD_FILE: MSMg01no358_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:52 2005
(555 letters)
>mm_chr1_82337833_82338787
Length = 955
Score = 946 bits (489), Expect = 0.0
Identities = 548/591 (92%), Gaps = 36/591 (6%)
Strand = Plus / Plus
Query: 1 ccgaaagacaagcttgacttggccctggactggcctagccagtgctgcctctgtctcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ccgaaagacaagcttgacttggccctggactggcctagccagtgctgcctctgtctcatg 224
Query: 61 ttgcatttcgtatcttccacagtaatgcttaagaatcagtagcatgaaatggggagatct 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 225 ttgcatttcgtatcttccacagtaatgcttaagaatcagtagcatgaaattgggagatct 284
Query: 121 gtatcggttcaaggttacctagagaatgatgtggcttgtgcctctcaataatttcattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtatcggttcaaggttacctagagaatgatgtggcttgtgcctctcaataatttcattga 344
Query: 181 aacgaatatccaatcatgatggaaagatggctcagccatgaagaacacatattgattggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aacgaatatccaatcatgatggaaagatggctcagccatgaagaacacatattgattggt 404
Query: 241 cttccagaggatccaagtttgatttccagcatccttgtagggctacccacagtcacctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttccagaggatccaagtttgatttccagcatccttgtagggctacccacagtcacctgt 464
Query: 301 aacttcagctccactggaatacatatattctcttttcagtgtttttccatagaggctaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aacttcagctccactggaatacatatattctcttttcagtgtttttccatagaggctaca 524
Query: 361 ggaatccatgttattggtatttatttgttgttaatatttatataaca------------- 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaatccatgttattggtatttatttgttgttaatatttatataacataaaatgaggttg 584
Query: 408 -----------------------cctgcagtcacatatatttacctgtactcatatacat 444
||||||||||||||||||||||||||||||||||| |
Sbjct: 585 ccttcttctggcctctctgggcacctgcagtcacatatatttacctgtactcatatacgt 644
Query: 445 aatttaaaacaaaaatgaatctttaaattataagtgtccaacccattaccatggtatgta 504
||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct: 645 aatttaaaataaaaatgaatcttgaaaatataagtgtccaactcattaccatggtatgta 704
Query: 505 ccccatatcttgggagccaccattgtcatggtatgcaccctgtatcttggg 555
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 705 ccccatatcttgggagccaccattgtcatggtatgcgccctgtatcttggg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
