BAC Information

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BAC

Clone NameMSMg01-358P01
Chromosome1 (Build37)
Map Location 63,222,590 - 63,223,029
singlet/doubletsinglet
Overlap geneNdufs1, Eef1b2
Upstream genePard3b, LOC667592, Nrp2, LOC100043070, A430093A21Rik
Downstream geneGpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P01.T7 (MSMg01no358_p01.b1)MSMg01-358P01.TJ (MSMg01no358_p01.g1)
ACCAG468476AG468477
length731719
length of high quality
(start - end)		528 (34 - 561)439 (62 - 500)
definitionCHROMAT_FILE: MSMg01no358_p01.b1 PHD_FILE: MSMg01no358_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:20 2005CHROMAT_FILE: MSMg01no358_p01.g1 PHD_FILE: MSMg01no358_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTCAACT
AATGACTACTAAATGGCTGAGAAGCACCTAAAAAAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTT
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGATAGCAGATGCTG
GCAAGGATGTGGATAAAGAGGAACACTCCTCCATTGATGGTGGGATTTCA
AGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTG
GACATAGTACTACCGGAAGATCCAGCAATACCACTCCTGGGCATATATCC
AGAAGATGTTCCAACTTGTAATAAGGACACATGTTCCACTATGTGCATAG
AAGCCTTATTTACAATAGCCAGAAGCTGGAAAGAACGCAGATGTCCCTCA
ACAGAGGAATGGATACTGAAAATGTGGTACATTTACACAATGAAGTACTA
CTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAGACAAATGGATGG
ATCTGGAGGATATAATTCTGAGTGAGGTAACCCAATCACAAAAGAACCAC
CCTGATATGCACTCACTGATTATTGGATATTAGCCCAGAAGCTCGAATAC
CCCAGATACCTTTTGCAAAACACTTGAAACTCTAAAAGAATGGATAACCA
AGTGTGGAAACCCCCCTTCCTTTCTAAAAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTGATAAGGTTACATGGTAGCTGGGAGTCTTCTGACTG
GGCTAGTGGGAACCGAACTCGGATCCTCTCTGCAAGGCACTCTTAACCGC
TTGACTCTCCCTCCAGCTCCGACTGAGCTAACTTTTAGTTTTTGTCAGTT
CTCCCCGTCGGTGGAATGAATAAAATACTACCCAACATGATCACCGGGTA
GACAAAAACAAACAGTAGCGTGGACAGGTTCAAGACAGCAACTAAACCGA
TGCCTGAGGTTTAAGTCTCTCGTGACCCTGGGAGATGAACCGGTCTCCTG
ATGACAGGGCCATCTCCTGTCTTCCCCTGCAAAGAGAGAGTAGCTCGCAA
GCCCGGACTCCCAAAGGTCTCCTGATCGGCTTAGGCTCCATCAGACTAGA
AACCAAGGCTCATAACCCTCACCTGCCGGCTCTCCCGGGTTCCAGAGGTG
GTGGGGCAGGAGCTGGTACCCAGTCAAGGGCAAGAGGAGAACGGCTTGTC
TGACCTATGGGATGCAGACCTGCCAAAAAAGAAAACACCACTCGAAGCGC
TTCAACTTGTCCAGTTCAACGCGGCTTCACCTTTTCTCCGGATCCCACCG
AGTATTCCCGCGGACCTGTCCGGGTCTCCCTGACCCCTCAAAACCCTGGC
CGTTAAATCAATATGGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p01.g1 MSMg01no358_p01.g1 CHROMAT_FILE:
MSMg01no358_p01.g1 PHD_FILE: MSMg01no358_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:20 2005
         (439 letters)



>mm_chr1_63222390_63223229
          Length = 840

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%), Gaps = 1/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgataaggttacatggtagctgggagtcttctgactgggctagtgggaaccgaactcg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgataaggttacatggcagctgggagtcttctgactgggctagtgggaaccgaactcg 260

                                                                       
Query: 61  gatcctctctgcaaggcactcttaaccgcttgactctccctccagctccgactgagctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcctctctgcaaggcactcttaaccgcttgactctccctccagctccgactgagctaa 320

                                                                       
Query: 121 cttttagtttttgtcagttctccccgtcggtggaatgaataaaatactacccaacatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttagtttttgtcagttctccccgtcggtggaatgaataaaatactacccaacatgat 380

                                                                       
Query: 181 caccggg-tagacaaaaacaaacagtagcgtggacaggttcaagacagcaactaaaccga 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccgggctagacaaaaacaaacagtagcgtggacaggttcaagacagcaactaaaccga 440

                                                                       
Query: 240 tgcctgaggtttaagtctctcgtgaccctgggagatgaaccggtctcctgatgacagggc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctgaggtttaagtctctcgtgaccctgggagatgaaccggtctcctgatgacagggc 500

                                                                       
Query: 300 catctcctgtcttcccctgcaaagagagagtagctcgcaagcccggactcccaaaggtct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catctcctgtcttcccctgcaaagagagagtagctcgcaagcccggactcccaaaggtct 560

                                                                       
Query: 360 cctgatcggcttaggctccatcagactagaaaccaaggctcataaccctcacctgccggc 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 cctgatcggcttaggctccatcagaccagaaaccaaggctcataaccctcacctgccggc 620

                               
Query: 420 tctcccgggttccagaggtg 439
           ||||||||||||||||||||
Sbjct: 621 tctcccgggttccagaggtg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space:   357330
Effective search space used:   357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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