BAC Information

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BAC

Clone NameMSMg01-358P03
Chromosome1 (Build37)
Map Location 33,179,996 - 33,180,511
singlet/doubletsinglet
Overlap geneLOC100040828
Upstream geneKhdrbs2, EG408191, EG633498, LOC213711
Downstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P03.T7 (MSMg01no358_p03.b1)MSMg01-358P03.TJ (MSMg01no358_p03.g1)
ACCAG468480AG468481
length718721
length of high quality
(start - end)
539 (36 - 574)516 (62 - 577)
definitionCHROMAT_FILE: MSMg01no358_p03.b1 PHD_FILE: MSMg01no358_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:20 2005CHROMAT_FILE: MSMg01no358_p03.g1 PHD_FILE: MSMg01no358_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAC
TTTTCCGCTGGGGAACAAAAGTACCAGTGAGTACAGCTTTACAAGGTAAG
TCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAA
GTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGT
TAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTAGTTAAGGCAGGG
CAGATTCTAGATGAAGTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGA
AAGAATAGGAGCAAAGAGAAAATATGGTACACAAAATAAGTATACAGGCC
TTTCCACGGGTCTTAAACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACC
TTGGGAGAGATTAGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCA
ATCAGCGGAGGTTTCTAGGAGAAGGAGCCTCTACTCATCACTAGGTGAGC
TCAAGAAGCCAGTTCTTAGTAGTTCTGAATCAGATGANAAGGCTATTAGG
GCCTGTAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGGACAATAATGACA
GAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCACCCTTGGAGTTG
TAGATCCAGGATTGTAAAAGGGAAACTTCAGGTTTCTCTGGTCCTGGCCC
CCCAGTTGTTTTTTTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGGGTGGCAGCTTGATACTGTAGAAAATGGGTGACAAGC
TCTGAGACATTCCTGCTGGTCCGAATCATGAAGAAGCAAGCAAAGTAGTT
TTGAGACATGAAGTGATCTTCAGGTTGGCCTGATGAGAAGGTCAGAAAGG
AGCCTTTTATTTTTAAAGGTGATTTGTTACAACAGAAGGCATGACTTCAA
TGTTCTGTTTCATAATGTCACATATAGCTTGTCTATATGCTGACGTCCTC
AAGTATGTCAGTCTCTGAAGAACCATTCTGGAAATGCTCTTATCTGTGTT
TTATGCTGTGGGGAAATTGTTTTATGTCACTGTTAGTGAAACAGGTGTTT
ACATACCACCCTGCAGCAAGGATGGGAGATACAGTGGAAGATGAGAATGG
GGAAGAAGACAGAGCCAAATATATTTAGGTTGTAGCCTAAGTTCATTATT
TAATATGAGTTAGATAGGACTGGGGAGACGACTCAGTACAGTGACTGCTG
TGTGTTCATGGNGACATAAGTTGGCACCTTCAGAACCCATGTCAAACACT
GGAAGTGATAGTATGTATCAGGTTTGGTGAGACAATCTTTCCTAATCAAA
TATAGCTATTAACGAAAGACCCCCAGTGACACTTCACCCTCTGGTTTCTA
CACCTATCCTCCCCCCTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p03.g1 MSMg01no358_p03.g1 CHROMAT_FILE:
MSMg01no358_p03.g1 PHD_FILE: MSMg01no358_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:20 2005
         (516 letters)



>mm_chr1_33179796_33180711
          Length = 916

 Score =  953 bits (493), Expect = 0.0
 Identities = 510/516 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtggcagcttgatactgtagaaaatgggtgacaagctctgagacattcctgctggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agggtggcagcttgatactgtagaaaatgggtgacaagctctgagacattcctgctggtc 657

                                                                       
Query: 61  cgaatcatgaagaagcaagcaaagtagttttgagacatgaagtgatcttcaggttggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cgaatcatgaagaagcaagcaaagtagttttgagacatgaagtgatcttcaggttggcct 597

                                                                       
Query: 121 gatgagaaggtcagaaaggagccttttatttttaaaggtgatttgttacaacagaaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gatgagaaggtcagaaaggagccttttatttttaaaggtgatttgttacaacagaaggca 537

                                                                       
Query: 181 tgacttcaatgttctgtttcataatgtcacatatagcttgtctatatgctgacgtcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgacttcaatgttctgtttcataatgtcacatatagcttgtctatatgctgacgtcctca 477

                                                                       
Query: 241 agtatgtcagtctctgaagaaccattctggaaatgctcttatctgtgttttatgctgtgg 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 476 agtatgtcagtctctgaagaaccgttctggaaatgctcttatctgtgttttatgctgtgg 417

                                                                       
Query: 301 ggaaattgttttatgtcactgttagtgaaacaggtgtttacataccaccctgcagcaagg 360
           |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 416 ggaaatcgttttatgtcactgttagtgaaacaggtgtttacatagcaccttgcagcaagg 357

                                                                       
Query: 361 atgggagatacagtggaagatgagaatggggaagaagacagagccaaatatatttaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgggagatacagtggaagatgagaatggggaagaagacagagccaaatatatttaggtt 297

                                                                       
Query: 421 gtagcctaagttcattatttaatatgagttagataggactggggagacgactcagtacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 296 gtagcctaagttcattatttaatatgagttagataggactggggagatgactcagtacag 237

                                               
Query: 481 tgactgctgtgtgttcatggngacataagttggcac 516
           |||||||||||||||||||| |||||||||||||||
Sbjct: 236 tgactgctgtgtgttcatggggacataagttggcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)