BAC Information

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BAC

Clone NameMSMg01-359B16
Chromosome1 (Build37)
Map Location 43,894,431 - 43,894,663
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1
Downstream geneLOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359B16.T7 (MSMg01no359_b16.b1)MSMg01-359B16.TJ (MSMg01no359_b16.g1)
ACCAG468599AG468600
length769737
length of high quality
(start - end)
188 (32 - 219)238 (61 - 298)
definitionCHROMAT_FILE: MSMg01no359_b16.b1 PHD_FILE: MSMg01no359_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:32 2005CHROMAT_FILE: MSMg01no359_b16.g1 PHD_FILE: MSMg01no359_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCTTT
CCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCT
GCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATA
GTGAATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTG
GAATAAAACCTACTTGTTCAGGATGNATGATTGCTTTAATGTGATCTTGA
TTCGTTACAATTTATGAGATTTGCTCATTCTAAAATGCGATCACTTGTTT
CGGTTTNAATGCCTTNGTGTTATTTTTTTTNTTTTTNNNNNTTTNNTTTT
TTTTTTNCTTTTTCCCCCTTTTTTTTTNNTTTTTNTTTTTTNTTTTTTNN
TTTTTNNNNNNNTTTTTTTTTTTTTTTTNTTTNNNNNTTTTTTNNCNTTC
TGCCGTTTGGGGGATTTTTTNNNNNNNNNNNTNNNNNNNCCNCNNNTTNN
NTNTTNNNTNTNNTTTTTTTTTTTTTTTTNTTNTTCTTAATCCAAAACCA
GAAGAAAGAATTTTNNTNNCCCCCNTCTTNCTTTTTTCCCTTCCTACTCC
GCGACCACAGCTTTTTTTNNTTNNNNTTTNTTNNTNNTCCCCTTCCCCTT
TCACACAATACCAAACACGTTTTNNNNNNTNNNNNNNNNNCNNCNNAACA
ACAACAAAAAGAAAATTNNNNNCNCCCCTTTTTTTTNCCTTTCTTATATC
TAGTAGAGAGTAAACGCGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCTCTGCCCTCTGAAGGTTTGCTGGAATAAAATGTCTA
AGATAAATTAAATGGGAGAAAAGTATGTAAATGCGTTACTGTCCTTAAGT
ACAGCCCAACATAATTCAGAAGCTTTTGGGCCCTACTCTCTCTAGGGGAA
GTGAAGTACAGAAAATGTCAGAAAACAGCATATTGGGTTTTTCTCTTGTT
GTTGTTGGGCTGTTTTGTTTTGTTTTGTTTTTATTGCTAACCTTACTCCC
GTGACGCTCATCTTCCTAGAGGACTTCTTTATTTTAGATATACGCCTCCC
CTCTTTATCGTCCTTGCGCTATCAACCCCGTCTGCCATTTCCTTTCGTCT
CATTTTTTCGCCCTTTTTCCCCTCTCCCCCTTTTTTTTTTTATTTCCCTT
ATTACTTCTCCCCCCTCCAACTCCTTTCCTTTCCCTTTCTCTTCCTTCCT
ATTCTATTTTCCTCTTCATTTCCCTTCCTCCTTCTTTCCTTCTTTTTCTC
CCCCCTCTTTTTTTCTTTTCCTTTCCTTCCCATTCCTTTTTTTTTTAATT
CCCCTTTTTTCCCCTTCTTCTATCTTCCCTTTCTCTCCTCCCCCTCCAAA
TTATTTCTCTTTCCCCTCTTTCCCCTTTTTTTTTTTTTTTTTTCCTCCCC
TTTTTCTCTTCCTCCTCCGCCTCTTTTTTCCTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_b16.g1 MSMg01no359_b16.g1 CHROMAT_FILE:
MSMg01no359_b16.g1 PHD_FILE: MSMg01no359_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:32 2005
         (238 letters)



>mm_chr1_43894198_43894835
          Length = 638

 Score =  418 bits (216), Expect = e-121
 Identities = 230/236 (97%), Gaps = 3/236 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctctgccctctgaaggtttgctggaataaaatgtctaagataaattaaatgggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tccctctgccctctgaaggtttgctggaataaaatgtctaagataaattaaatgggagaa 407

                                                                       
Query: 61  aagtatgtaaatgcgttactgtccttaagtacagcccaacataattcagaagcttttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagtatgtaaatgcgttactgtccttaagtacagcccaacataattcagaagcttttggg 347

                                                                       
Query: 121 ccctactctctctaggggaagtgaagtacagaaaatgtcagaaaacagcatattgggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 346 ccctactctctctaggggaagtgaagtacagaaaatgtcagaaaacagcatgttgggttt 287

                                                                   
Query: 181 ttctcttgttgttgttgggctgttttgttttgttttgtttttattgctaaccttac 236
           ||||||||||||||   |||| |||||||||||||||||||||||| |||||||||
Sbjct: 286 ttctcttgttgttg---ggcttttttgttttgttttgtttttattgttaaccttac 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)