BAC Information

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BAC

Clone NameMSMg01-359D24
Chromosome1 (Build37)
Map Location 97,937,731 - 97,938,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D24.T7 (MSMg01no359_d24.b1)MSMg01-359D24.TJ (MSMg01no359_d24.g1)
ACCAG468709AG468710
length798767
length of high quality
(start - end)		421 (24 - 444)390 (52 - 441)
definitionCHROMAT_FILE: MSMg01no359_d24.b1 PHD_FILE: MSMg01no359_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:42 2005CHROMAT_FILE: MSMg01no359_d24.g1 PHD_FILE: MSMg01no359_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACGACTCCTATATTCAGAGGATCCGCGGAATTCCAAGCCTAGGGTTGGC
CCAAGGACTACCTAGGACATTGGTGAAGGTCAGGAAGCAAAGTTCAATTT
TGCTTAGGTATTTGGCAAGTCATTGCGTAGAGACACCTATAATAAAACAA
TCTTGAAAAAAAGCACATAGATCCATTTGCAAGGACAATTTTGGAGCATT
TCTTATCCAGGATGCCATGGTTCCAGGAGACTAAGTTTCTGTGAACTGTC
CAGGTTTCTAGGCCTGTCACACAAGTCACTACTGGAGTGGGTGTAGCACC
TCCTGTTAAGGCAGTTTATGCAATCACTAAGGTCACTATTCCTTCAAAGT
AACCAAAGGCAATATTTGTTATTAGGAAAGCAACACAAAAGCTTAGCATA
GCTGTCCTTTGGGAGGCCCAACAAGCAGCTATTTGAGAAAGATTCAGATA
TTTACACTCAACCACTGAACTGAAGGCCAGGACCCCTTTCACAAAGTATG
CTGGTTCACCAGCAGTCCCCATGTAGAAGAATGAAGTCGAACGAACCTTA
ACCCCCTGTACAAAGCTCAAGTCCAGTAAATTAGGGAATCCCCCTTAAAC
CAAAACCCTGAAATTTTATAGTAAAAAAGGGGAAAGGGCTCTACCCCAAC
CCCTGGGTTATGGGAAAATTTTCTTGAAAAAACAACAGAAATCCGCGCCC
AAATCAAAAGGAAAAATGGGACCCCTTAACTGTCAGTTTTTAAGAGAAGA
ACCTGCTTTGTATTCCCCCACCCTCAATCGTGGAAAATTTTTCCCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCACACTCCTAAGCCCCTTACCCCATAAAAACCCCTAACTATCTCCTGTG
TGGGATGCATGTCTGTCCGGAGCTCCGTCATTAGTCATTAAACTGCCTCA
TGTGATTACAGCAAAATGGATTCTCATGTTTCTTTGGGTGCTCTTTCACT
CCCGAGACTAAAGTGGGGGTCCCCAAAGGGGGTCTTACACTGCTAAACTA
CAATGGGAGATACTAAAGAGATTACAAAAATCATGATCTAGGCAAAGGGA
TCACACCTTCAATTCCATGCAGCGTATTGAAGCTGGAGACTTAGCTCACT
CTTTAGTTTGCTTTGAGTTTCTGAGGTGACTGGGCTGAACCTTTGAACAG
CATTGGAACAGATATGACCCTTAGGTTTCTTGGGGCTGAAGAGATGACTC
AGAGATTAAGAGCACTGCTTGCTCTCCTAGATGACCTGGTTCAATTCTCC
ATGTGGAAATCCACAACCGTTTGTAACTCTAATCTCACGGATTCACCATC
TTCTGTCCTCTGCTTACACTGGGATAAACAATATTCCCTAAATTCTTTTT
GTATACACTCTCCACCCTTAAATTTATTAATTTATTCCTTTTATTCCCAC
TTTTTTATACTCCATAACAATCTTCTTTTCTCTTGTTTTCCCTTTATACC
ATTCCCCTCTTTTTTTTTTTTTTTCCTCCCTTATTTTCCTTCTCCTCCCT
TTTTTTTTTTCTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d24.g1 MSMg01no359_d24.g1 CHROMAT_FILE:
MSMg01no359_d24.g1 PHD_FILE: MSMg01no359_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:42 2005
         (390 letters)



>mm_chr1_97937430_97938219
          Length = 790

 Score =  746 bits (386), Expect = 0.0
 Identities = 389/390 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacactcctaagccccttaccccataaaaacccctaactatctcctgtgtgggatgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cacactcctaagccccttaccccataaaaacccctaactatctcctgtgtgggatgcatg 632

                                                                       
Query: 61  tctgtccggagctccgtcattagtcattaaactgcctcatgtgattacagcaaaatggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tctgtccggagctccgtcattagtcattaaactgcctcatgtgattacagcaaaatggat 572

                                                                       
Query: 121 tctcatgtttctttgggtgctctttcactcccgagactaaagtgggggtccccaaagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctcatgtttctttgggtgctctttcactcccgagactaaagtgggggtccccaaagggg 512

                                                                       
Query: 181 gtcttacactgctaaactacaatgggagatactaaagagattacaaaaatcatgatctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtcttacactgctaaactacaatgggagatactaaagagattacaaaaatcatgatctag 452

                                                                       
Query: 241 gcaaagggatcacaccttcaattccatgcagcgtattgaagctggagacttagctcactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcaaagggatcacaccttcaattccatgcagcgtattgaagctggagacttagctcactc 392

                                                                       
Query: 301 tttagtttgctttgagtttctgaggtgactgggctgaacctttgaacagcattggaacag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 391 tttagtttgctttgagtttctgaggtgactgggctgaacctttgaacaacattggaacag 332

                                         
Query: 361 atatgacccttaggtttcttggggctgaag 390
           ||||||||||||||||||||||||||||||
Sbjct: 331 atatgacccttaggtttcttggggctgaag 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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