Query= MSMg01no359_k08.b1 MSMg01no359_k08.b1 CHROMAT_FILE:
MSMg01no359_k08.b1 PHD_FILE: MSMg01no359_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:10 2005
(378 letters)
>mm_chr1_38714534_38715311
Length = 778
Score = 677 bits (350), Expect = 0.0
Identities = 368/374 (98%)
Strand = Plus / Plus
Query: 5 gaattcctcttggtctgggctgagaaccgagtggaagaggaggagtgggtaaagtgggag 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcctcttggtctgggctgagaaccgagtgggagaggaggagtgggtaaagtgggag 264
Query: 65 ctgagtttgaagaacaggctggattttgacttctggtcttgaatacaggaagtagaggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgagtttgaagaacaggctggattttgacttctggtcttgaatacaggaagtagaggca 324
Query: 125 gggagagtgaaaaccgatttgaatgtggacacagatcaaggcacctgtggatgggatgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggagagtgaaaaccgatttgaatgtggacacagatcaaggcacctgtggatgggatgtg 384
Query: 185 ctggccaatcagatcacatgaggacacagaaggaaaatagcgggagaggaggacagctcc 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ctggccaatcagatcacatgaggacacagaaggaaagtagcgggagaggaggacagctcc 444
Query: 245 gagttgctggcctgatggatgagaatggggcttttatggagatatcatgaaactgcagga 304
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 445 gagttgctggcctgatggatgagaatggagcttttatggagatgtcatgaaactgcagga 504
Query: 305 gaagcaggggtgttgttagggaaatgatgttaagatcatgaagcagaaagcacactcgac 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 gaagccggggtgttgttagggaaatgatgttaagatcatgaagcagaaagcacactcaac 564
Query: 365 ggtgaggctacgtg 378
||||||||||||||
Sbjct: 565 ggtgaggctacgtg 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space: 283761
Effective search space used: 283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_k08.g1 MSMg01no359_k08.g1 CHROMAT_FILE:
MSMg01no359_k08.g1 PHD_FILE: MSMg01no359_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:10 2005
(450 letters)
>mm_chr1_38783939_38784789
Length = 851
Score = 826 bits (427), Expect = 0.0
Identities = 445/451 (98%), Gaps = 1/451 (0%)
Strand = Plus / Minus
Query: 1 tctaaaagtgacacacacgttcaattattttatgtaaatgagaaagactgaaatcaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctaaaagtgacacacacgttcaattattttatgtaaatgagaaagactgaaatcaagga 592
Query: 61 aacctcttggttgaagaagtttctagactttcttgggttcagaccttgtggatctccact 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 591 aacctcttggttgaagaagtttctagactttcttgggttcagaccttctggatctccact 532
Query: 121 ttctggaccttgttctaggtaagccctacacacagcaacagcat-ggtgaggagtagtat 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 531 ttctggaccttgttctaggtaagccctacacacagcaacagcatcggtgaggggtagtat 472
Query: 180 cacctagggccattgggagtgctagaatttggcatacactaagtttgttcctgacctctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cacctagggccattgggagtgctagaatttggcatacactaagtttgttcctgacctctg 412
Query: 240 gaaacttacagggaggcaaaacttaggctcacacttcatttcttgagagaaattggagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaaacttacagggaggcaaaacttaggctcacacttcatttcttgagagaaattggagaa 352
Query: 300 atgttgtcaagtgtactcagtaagcaggtggcccttgcttcagggtcctcagcaatagta 359
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 351 atgttgtcaagtgcactcagtaagcaggtggcccttgctttagggtcctcagcaatagta 292
Query: 360 gtgtcacagtatccctgcaggcattaaagtgtaccccatactttggggctgtctgggcac 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtgtcgcagtatccctgcaggcattaaagtgtaccccatactttggggctgtctgggcac 232
Query: 420 ttctggacatttatctgatgggagttgtgca 450
|||||||||||||||||||||||||||||||
Sbjct: 231 ttctggacatttatctgatgggagttgtgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space: 370040
Effective search space used: 370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
