Query= MSMg01no359_m05.b1 MSMg01no359_m05.b1 CHROMAT_FILE:
MSMg01no359_m05.b1 PHD_FILE: MSMg01no359_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:19 2005
(507 letters)
>mm_chr1_82050756_82051662
Length = 907
Score = 915 bits (473), Expect = 0.0
Identities = 495/503 (98%), Gaps = 2/503 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaactcatatcaagaaaatacagatatgccatttttcccacatgacctcaattt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactcaaatcaagaaaatacagatatgccatttttcccacatgacctcaattt 264
Query: 65 gtttgcaaattaacaattatgtttaaatctgcagagccacatatgcttaaaaccaacaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttgcaaattaacaattatgtttaaatctgcagagccacatatgcttaaaaccaacaac 324
Query: 125 ttccccttctagcaccaatcccttcctcaacacagattcattcacatacaggtaggcatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccccttctagcaccaatcccttcctcaacacagattcattcacatacaggtaggcatc 384
Query: 185 tctaatttaagacattgaagcctgttgaacaacaatattatatataagtagaaaattcta 244
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tctaatttaaaacattgaagcctgttgaacaacaatattatatataagtaggaaattcta 444
Query: 245 tttctgacttcatctgacatgtcatggccaaaattcagacttatttaaaagaaacactgc 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 tttctgacttcatctgacatgtcatggacaaaattcagacttatttaaaagaaacactgc 504
Query: 305 ataaaattatcttcaaacatggacaaaaagtatttatgaaatccaatgagttttactttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaaattatcttcaaacatggacaaaaagtatttatgaaatccaatgagttttactttt 564
Query: 365 acactcggaattcaaccgtattatatgtcattgcctatttacaaacattccaaaatcaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acactcggaattcaaccgtattatatgtcattgcctatttacaaacattccaaaatcaaa 624
Query: 425 acaaggtaaattcaagatgctttgggttctaaacatttttagattacaccttgacatcta 484
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaggtaaattcaagatgccttgggttctaaacatttttagattacaccttgacatctg 684
Query: 485 aattcttactctctctctggata 507
|||||||||||||||| |||||
Sbjct: 685 aattcttactctctct--ggata 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_m05.g1 MSMg01no359_m05.g1 CHROMAT_FILE:
MSMg01no359_m05.g1 PHD_FILE: MSMg01no359_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:19 2005
(342 letters)
>mm_chr1_82210207_82210949
Length = 743
Score = 632 bits (327), Expect = 0.0
Identities = 339/343 (98%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 1 attcattcttttcacaggctacagtcagcacttagttcagtgtgtctcgatctccagagc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 543 attcattcttttcacaggctacagtcagcacttagtgcagtgtgtctcgatctccagagc 484
Query: 61 tattgccagtttattctgggagatgcttacag-agaaaagcatatctcaatcatctctaa 119
| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 483 tgttgccagtttattctgggagatgcttacagaaaaaaagcatatctcaatcatctctaa 424
Query: 120 atactttatatgattcattaaggctccatgaaagagtcaacaaaggatacatgtatttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atactttatatgattcattaaggctccatgaaagagtcaacaaaggatacatgtatttct 364
Query: 180 acttagaacttaatgaagagctttaaaataagagtgatccctggttaaacatttggttaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acttagaacttaatgaagagctttaaaataagagtgatccctggttaaacatttggttaa 304
Query: 240 atatcataaaacatcaactattataaaatgtgacaggtactgtagcagctggcgatattc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atatcataaaacatcaactattataaaatgtgacaggtactgtagcagctggcgatattc 244
Query: 300 tgcttgctctctttaaatgctccctttaaaaatagcttcccca 342
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgcttgctctctttaaatgctccctttaaaaatagcttcccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space: 244422
Effective search space used: 244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
