Query= MSMg01no360_a24.b1 MSMg01no360_a24.b1 CHROMAT_FILE:
MSMg01no360_a24.b1 PHD_FILE: MSMg01no360_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:43 2005
(451 letters)
>mm_chr1_166693097_166693942
Length = 846
Score = 804 bits (416), Expect = 0.0
Identities = 440/450 (97%), Gaps = 7/450 (1%)
Strand = Plus / Plus
Query: 3 tctatttataattgccaaattcaccttggatgagcatttgcaaagaacgtttataatttc 62
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tctatttataaatgtaaaattcaccttggatgagcatttgcaaagaacgtttataatttc 262
Query: 63 gtcaatactaaattattttaatccccaagatgattctcaagaagacaaagatacagcaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcaatactaaattattttaatccccaagatgattctcaagaagacaaagatacagcaaa 322
Query: 123 actcagaaggaaaatttgcttagatccaggacttacattaggtcacattaagggtggtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actcagaaggaaaatttgcttagatccaggacttacattaggtcacattaagggtggtgg 382
Query: 183 taggaaggtcaaagagattcatttgaaatcccaactttatctctttaaaaattatagact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taggaaggtcaaagagattcatttgaaatcccaactttatctctttaaaaattatagact 442
Query: 243 gataaacagagtgacagagatggggggggg-cgacaaaatcttggtatgcttcccaggtt 301
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 gataaacagagtgacagagatggggggggggcgacaaaatcttggtatgcttcccaggtt 502
Query: 302 aatccccctgcctcatcttcccaggtgctattatttagggtatataccactgtacctggc 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 aatccccctgcctcatcttcccaggtgctattatttagggtatataccactgta--t--- 557
Query: 362 acaaattatttttaactgaaacatatttgtacgtcaatagagtacagtataagctgaagt 421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 a-aaattatttttaactgaaacatatttgtacgtcaatagagtacagtataagctgaagt 616
Query: 422 atgtaatgatcaaatattagcatttctgtg 451
||||||||||||||||||||||||||||||
Sbjct: 617 atgtaatgatcaaatattagcatttctgtg 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 846
Length adjustment: 10
Effective length of query: 441
Effective length of database: 836
Effective search space: 368676
Effective search space used: 368676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_a24.g1 MSMg01no360_a24.g1 CHROMAT_FILE:
MSMg01no360_a24.g1 PHD_FILE: MSMg01no360_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:43 2005
(315 letters)
>mm_chr1_166840409_166841123
Length = 715
Score = 503 bits (260), Expect = e-147
Identities = 284/292 (97%)
Strand = Plus / Minus
Query: 1 cacctccacaaaatgcatttgccagatataccattttgcctctgtgacataagagcagat 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacctccacaaaatacatttgccagatataccattttgcctctgtgacataagagcagat 423
Query: 61 agcatttgacccaactataaacccacaaaccgacacaaatgctcacaatacttgcatgag 120
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 422 agcatttgacccaagtataaacccacaaaccaacacaaatgctcacaatacttgcatgag 363
Query: 121 aaccttcacagggaatgggtagagactagggatatttcatttgattgaactggggtaagt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 362 aaccttcacagggaatgggtagagactagggaaatttcatttgattgaactggggtaagt 303
Query: 181 tattcagtctgatataaaccataaattccttacattattagttcttattgatcacatgtc 240
||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct: 302 tattcagtctgatataaaccacaaattccttatactattagttcttattgatcacatgtc 243
Query: 241 ttggtagttctgtatatcccaacatgctatagtacttaaaaatgtgtgtgtg 292
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttggtagttctatatatcccaacatgctatagtacttaaaaatgtgtgtgtg 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
