NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCAACTACA
ATCAGGGAATAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAACATTG
TACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGG
ATACAGATTGGAAAAGAAGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTGTATATATAAGTGATCCTAAAAATTCCACCAGAGAACTCCTAAA
CCTTATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATCGTCAAAAACAATATAAAATACCTTGG
CGTGACTATAACTAAGGAGGTGAAAGATCTGTATGATAAGATCTTCAAGT
CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTTCCA
TGCTCATGGATTGGCAAGATCAACATTGTAAAAAAGGCTATCTTGCCAAA
AGCAATCTACAGATTCAATGCAATCCCCCATTAAAATTCCACTCCATTCC
TTTACGAATTAAAAAAGAAAATTTGGAAATTCATCTGGAA

NTCGATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGACTGCTCCTGTACAGCATA
AAGAGCTTTTGGAAAGTCACGTCTTCTCTCTTTCCCAGTGTATTTTCCTG
ATGTAGAAGGTAGTCATGTTTGCCATAGCAACATAAAGGTAATTAGCATA
TCTAGAACAAACCCCAGACAAAATGGCCACATACCAGATGCTTTTGAGAT
TTGATGCTCAAGTCCGAATGCTCTTTTACATTCTGTCCGGTTCTAATAGA
GAAAACTAACTGTGAACATGATTGAATCTACTTCATTCATCTAATTCTGT
TTAAATCAATGGCTTAAAACTACAAATGCCATGGGTGCTAGCTGGCCCTG
GAGAGCTTGTCTGTACCTTAGGTGAAATGAGCTAAGTTGACTGAATCTCT
CACAAAACAGATTACTCCTGGAAGTTTAAGAGGATAGAATTGCTAACCCC
TTTGCTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAT
CAGCCATTTTTCTTTTCTTCTCTTCACTCATTCATTATCGTTTTATTCTA
TTTTTCTACCCTTCCTACCTTTCCTTNNNTTTCCCTTCCTCCCCTTTCTT
TTTCCCTTTCCCCTTTCCTTTTTCCCCTTTCTTCCCTTTTTTTCCTTTCC
TTTCTTCTTTTTTCTCCTTCTCTCTTTTCTTCTTCCCTTTTTTCTTCTCT
TCCACCCN

Query= MSMg01no360_d05.g1 MSMg01no360_d05.g1 CHROMAT_FILE:
MSMg01no360_d05.g1 PHD_FILE: MSMg01no360_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:53 2005
         (434 letters)



>mm_chr1_56362439_56363272
          Length = 834

 Score =  787 bits (407), Expect = 0.0
 Identities = 429/445 (96%), Gaps = 14/445 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   agactgctcctgtacagcataaagagcttttggaaagtcacgtcttctctctttcccagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agactgctcctgtacagcataaagagcttttggaaagtcacgtcttctctctttcccagt 249

                                                                       
Query: 64  gtat--------------tttcctgatgtagaaggtagtcatgtttgccatagcaacata 109
           ||||              ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 250 gtattttcctggtagcagtttcctgatgtagaaagtagtcatgtttgccatagcaacata 309

                                                                       
Query: 110 aaggtaattagcatatctagaacaaaccccagacaaaatggccacataccagatgctttt 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaggtaattagcatatctagaacaaaccccagacaaaatggccacataccagatgctttt 369

                                                                       
Query: 170 gagatttgatgctcaagtccgaatgctcttttacattctgtccggttctaatagagaaaa 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gagatttgatgctcaagtccgaatgctcttttacattctgtccggttctaatagagaaaa 429

                                                                       
Query: 230 ctaactgtgaacatgattgaatctacttcattcatctaattctgtttaaatcaatggctt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctaactgtgaacatgattgaatctacttcattcatctaattctgtttaaatcaatggctt 489

                                                                       
Query: 290 aaaactacaaatgccatgggtgctagctggccctggagagcttgtctgtaccttaggtga 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaaactacaaatgccatgggtgctagctggccctggagagcttgtctgtaccttaggtga 549

                                                                       
Query: 350 aatgagctaagttgactgaatctctcacaaaacagattactcctggaagtttaagaggat 409
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 550 aatgagctaagttgactgaatctctcacaaaacagattactcctggaagtctaagaggat 609

                                    
Query: 410 agaattgctaacccctttgctagta 434
           |||||||||||||||||||||||||
Sbjct: 610 agaattgctaacccctttgctagta 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)