BAC Information

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BAC

Clone NameMSMg01-360D22
Chromosome1 (Build37)
Map Location 16,567,926 - 16,568,401
singlet/doubletsinglet
Overlap geneUbe2w
Upstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
Downstream geneTceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360D22.T7 (MSMg01no360_d22.b1)MSMg01-360D22.TJ (MSMg01no360_d22.g1)
ACCAG469467AG469468
length759787
length of high quality
(start - end)		479 (43 - 521)373 (73 - 445)
definitionCHROMAT_FILE: MSMg01no360_d22.b1 PHD_FILE: MSMg01no360_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:56 2005CHROMAT_FILE: MSMg01no360_d22.g1 PHD_FILE: MSMg01no360_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTAAACATCTACAAGAGTAATAGTTAGCAATTTAAGAAGAAAGTTAT
CGCTGAGGCGGGTGTAAGGGTGCATGACTGCAAATTTGGGATGCAACCCA
CATTTGGAACTGCTGTACTAGAGCATGGGTAGCTAGCTTGTCAGGGGCCA
CAGCTCTTAAGAGAGCTAGCTGATGCTTCCTCTCCAGGTAGGGGTGAGAT
TTTCAGCCTCCATTGCCAGCCATGGTAGGAGTTTGACTGTCATGTACAGG
TATTGTATATGCAGTCACAGACACTATGAGTTCTTGTGAGCAACAGCTCC
TTATTGTTACTGTATGTGCATGCCACGGCTTGTATGTGGGGGTCAGGCTT
GCACGGAGCCACTGTGCACTTGCTTGTAAATATGTTTAAAGTAGCCTTGA
TTTGCTGACTCAAGGTGGCGCTCTCTGGTTTTTTAATGCTTTCTTTCCCC
ACGTGAACCCTGACTGCCTAGATAACCTTGTACCATTTCGCTTTGAGACA
AATGTGCTGCATCTGTACTCACGAAAGGAGCACAGTCTGCTGAAACTGAG
AGTGGAGCAGGTGTTGGACCATCCACTAGGATGCTTCCTGTTGAAATTTT
TTTCGTCCATGATAAAAAGCTAAAACCTTTCCCAATGGGACCTGGGAATG
GCTTTTCCTTGTACCCCCTAAAGGCCGCTAGTTACGGGGTTATAACCCCT
TTTTTTATG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTATCTTTGTTGAATCTTTCTGTGGTT
TAGGTATCAAAGTAATTGTGACTTCATAGAATGAGTTGGGTGAGTACCTT
CTACTTCTATTTTGTGGAATAGTTTGTGCATAACTGGAATTAGATATTCT
TTGAAGGTCTGATAGAACTCTGCTCTAAAACCATCTGGTCCTGGGCTTTT
GTTTTTTGGATGGGAGGCCATTAATGACTGCTTCTATTTCTTTAGTGGAT
ATGGGGATGTTTAGATCGTTAACTTGATCCTGGTTTAACTTTGGTACCTG
TATCTGTTTAGAAATTTGTCCATTTCATTCAGGTTTTCCAGTTTTGTTGA
GTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGGT
CTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGGAGGCTG
TCCCTGTGCCCCCCAGCGAGTCTATTCAAGGGGTTTATCTATTTTGGTGA
TTTTTCTCAATTATCCTTTTCCCCCTTTTGGTTGAAACTTCTTGTTAACA
TTTTCTCTTTTCCCCCTTGTTTGCATTTTTTCCCCTTTTTATTTCTTTTT
TCGGTTTTACCCTCTCTTGAGTGACTTCGCTCCTTTTATTTTTTCGTTCT
TCGCATTGTGGTTTCATCGGTTCCATTAGGTGTTTCCTCGCTTTTCATTA
TTTCTCATTTTCACCTATCATTTTCTTTCCATTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_d22.b1 MSMg01no360_d22.b1 CHROMAT_FILE:
MSMg01no360_d22.b1 PHD_FILE: MSMg01no360_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:56 2005
         (479 letters)



>mm_chr1_16567723_16568601
          Length = 879

 Score =  830 bits (429), Expect = 0.0
 Identities = 465/477 (97%), Gaps = 2/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtaaacatctacaagagtaatagttagcaatttaagaagaaagttatcgctg 63
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 ggaattcagtaaacatctagaagagtaatagttagctatttaagaagaaagttatcgctg 620

                                                                       
Query: 64  aggcgggtgtaaggg-tgcatgactgcaaatttgggatgcaacccacatttggaactgct 122
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggcgggtgt-agggatgcatgactgcaaatttgggatgcaacccacatttggaactgct 561

                                                                       
Query: 123 gtactagagcatgggtagctagcttgtcaggggccacagctcttaagagagctagctgat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtactagagcatgggtagctagcttgtcaggggccacagctcttaagagagctagctgat 501

                                                                       
Query: 183 gcttcctctccaggtaggggtgagattttcagcctccattgccagccatggtaggagttt 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcttcctcaccaggtaggggtgagattttcagcctccattgccagccatggtaggagttt 441

                                                                       
Query: 243 gactgtcatgtacaggtattgtatatgcagtcacagacactatgagttcttgtgagcaac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gactgtcatgtacaggtattgtatatgcagtcacagacactatgagttcttgtgagcaac 381

                                                                       
Query: 303 agctccttattgttactgtatgtgcatgccacggcttgtatgtgggggtcaggcttgcac 362
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 380 agcttcttattgttactgtatgtgcacgccacggcttgtatgtgggggtcaggtttgcac 321

                                                                       
Query: 363 ggagccactgtgcacttgcttgtaaatatgtttaaagtagccttgatttgctgactcaag 422
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgagccgctgtgcacttgcttgtaaatatgtttaaagtagccttgatttgctgactcaag 261

                                                                    
Query: 423 gtggcgctctctggttttttaatgctttctttccccacgtgaaccctgactgcctag 479
           |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 260 gtggcgctctctggtttttttatgctttcttttcccacgtgaaccctgactgcctag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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