Query= MSMg01no361_b04.b1 MSMg01no361_b04.b1 CHROMAT_FILE:
MSMg01no361_b04.b1 PHD_FILE: MSMg01no361_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:00 2005
(577 letters)
>mm_chr1_55575797_55576773
Length = 977
Score = 1102 bits (570), Expect = 0.0
Identities = 573/574 (99%)
Strand = Plus / Plus
Query: 4 ggaattctctgaatacctgcaggtcctcagcagtaattaattcaaggaggctgtcaaggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgaatacctgcaggtcctcagcagtaattaattcaaggaggctgtcaaggg 263
Query: 64 aacagtatagtttcgattattttgtgtttcctgtggtaatttctgttgggggaaataatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacagtatagtttcgattattttgtgtttcctgtggtaatttctgttgggggaaataatt 323
Query: 124 aaaaatagattgtgagccttaattaaatgaaatcttttgctggtgtgatctgagggccta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaaatagattgtgagccttaattaaatgaaatcttttgctggtgtgatctgagggccta 383
Query: 184 aacagttttctaattattcactgcaacaacctagctagtcagttttgccccagggaacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacagttttctaattattcactgcaacaacctagctagtcagttttgccccagggaacag 443
Query: 244 ttgcaaaaaattctttctaggaggaatgttctagatttttgtgagattttcctcttttcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcaaaaaattctttctaggaggaatgttctagatttttgtgagattttcctcttttcc 503
Query: 304 ttcagctttcattctactgcctgaaatagtcccacagtttctgctggtttgagtttcata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcagctttcattctactgcctgaaatagtcccacagtttctgctggtttgagtttcata 563
Query: 364 tcttgctctatactattgttgttttatttggagataagctcttcccgtgggactcaggta 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttgctctataccattgttgttttatttggagataagctcttcccgtgggactcaggta 623
Query: 424 gtcttcaaactccagatcttcctgtctcagccttttgagtattggatgcactagagtgta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcttcaaactccagatcttcctgtctcagccttttgagtattggatgcactagagtgta 683
Query: 484 ccgccacacctggggtgagcatgtttacagcttgttttttcaactaaattgtaaggtttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccgccacacctggggtgagcatgtttacagcttgttttttcaactaaattgtaaggtttg 743
Query: 544 ctctaagcacttagactggtgagtaatatatagt 577
||||||||||||||||||||||||||||||||||
Sbjct: 744 ctctaagcacttagactggtgagtaatatatagt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_b04.g1 MSMg01no361_b04.g1 CHROMAT_FILE:
MSMg01no361_b04.g1 PHD_FILE: MSMg01no361_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:00 2005
(536 letters)
>mm_chr1_55704358_55705289
Length = 932
Score = 617 bits (319), Expect = 0.0
Identities = 359/375 (95%), Gaps = 6/375 (1%)
Strand = Plus / Minus
Query: 162 gagatgaactatagatttagcaagtattaatttaggaatatcagaggggagtatgttagc 221
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 932 gagatgaaatatagatttagcaagtattaa--caggaatatcagaggggagtatgttagc 875
Query: 222 cacatggaggtttagaagtggcctagccattgagatagccaaggcattaaagtatgaagg 281
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 874 cacatggaggtttagaagtggcctagccattgagatagccaaggcattaaaatatgaagg 815
Query: 282 cagtgtgtgcctgtgtttttccttccaggatccagagtatctggggcagacttcagtaaa 341
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 814 cagtgtgagcctgtgtttttccttccaggatccagagtatctgggacaggcttcagtgaa 755
Query: 342 gcgcacaactacccgccaggatttaaatatttactgctatgcttgatcaagagaattgag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gcgcacaactacccgccaggatttaaatatttactgctatgcttgatcaagagaattgag 695
Query: 402 tgtgggaagtcagagagtggatatctgggagaggcagagtctgggaaggaaatccaacgc 461
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgtgggaagttagagagtggatgtctgggagaggcagagtctgggaaggaaatccaacgc 635
Query: 462 tataaaagtagaaagaatccattgagatcccaaaatgattctcaaccattccttctagag 521
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tataaaagtagaatg----cattgagatcccaaaatgattctcaaccattccttctagag 579
Query: 522 ttatgtgctataatt 536
|||||||||||||||
Sbjct: 578 ttatgtgctataatt 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 932
Length adjustment: 10
Effective length of query: 526
Effective length of database: 922
Effective search space: 484972
Effective search space used: 484972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
