Query= MSMg01no361_b12.b1 MSMg01no361_b12.b1 CHROMAT_FILE:
MSMg01no361_b12.b1 PHD_FILE: MSMg01no361_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:01 2005
(627 letters)
>mm_chr1_63187901_63188923
Length = 1023
Score = 1164 bits (602), Expect = 0.0
Identities = 616/623 (98%), Gaps = 4/623 (0%)
Strand = Plus / Plus
Query: 5 gaattcattanatttcttagaacctgagacaggaaggcttttgttctttttaggaaaata 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaatttcttagaacctgagacaggaaggcttttgttctttttaggaaaata 264
Query: 65 taaacaaagtagaggtcatataaagcatgattattgctcagcctaggaactaagtccctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaacaaagtagaggtcatataaagcatgattattgctcagcctaggaactaagtccctg 324
Query: 125 acacactcagatggtgactttccatccaagatcaaggactctctcattgcagcctctgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acacactcagatggtgactttccatccaagatcaaggactctctcattgcagcctctgga 384
Query: 185 agcggtcagtaacatttgagtctgcctttacaatggagccctcagttactaagcagactg 244
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcggt----aacatttgagtctgcctttacaatggagccctcagttactaagcagactg 440
Query: 245 aacaccagctctcaggaactggccaaaagttttataaactttctgattttactgtggggt 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaccagctctcaggaactagccaaaagttttataaactttctgattttactgtggggt 500
Query: 305 tattgtaaggtgggagttataatttttatccacagcttacaaatgaagaaacaatgttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattgtaaggtgggagttataatttttatccacagcttacaaatgaagaaacaatgttta 560
Query: 365 aaaatgttcaacacttctaaagttaaataagatctgatttggcaagaaatacttcagtaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgttcaacacttctaaagttaaataagatctgatttggcaagaaatacttcagtaa 620
Query: 425 gttatccataactagcatgcagtttccctcttctgatggaaattttattttactcttaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttatccataactagcatgcagtttccctcttctgatggaaattttattttactcttaga 680
Query: 485 ccattctttacgctttacaccattcttgccattagtatctaagtgtatccttagttcctg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ccattctttacgctttacaccattcttgccattagtatctaagtgtatccttagtttctg 740
Query: 545 gaggacagtccaaagatgtatggtcagcttaggcatacctaggtcctttcctgagtatcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggacagtccaaagatgtatggtcagcttaggcatacctaggtcctttcctgagtatcc 800
Query: 605 acttcactgcagactactgcggg 627
|||||||||||||||||||||||
Sbjct: 801 acttcactgcagactactgcggg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1023
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1013
Effective search space: 625021
Effective search space used: 625021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_b12.g1 MSMg01no361_b12.g1 CHROMAT_FILE:
MSMg01no361_b12.g1 PHD_FILE: MSMg01no361_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:01 2005
(503 letters)
>mm_chr1_63289877_63290779
Length = 903
Score = 965 bits (499), Expect = 0.0
Identities = 502/503 (99%)
Strand = Plus / Minus
Query: 1 tcacaatggtgggaggtacttctaatcagctaagagaggatgggcaactcggcttttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcacaatggtgggaggtacttctaatcagctaagagaggatgggcaactcggcttttaat 644
Query: 61 ttgatctgattatgtaaatcagttgtaatggaggagctatcctcgactcatttagttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttgatctgattatgtaaatcagttgtaatggaggagctatcctcgactcatttagttatt 584
Query: 121 ataccaagtgattgactgactctgaatcgttagtaattttttgttttgcattgaaatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ataccaagtgattgactgactctgaatcgttagtaattttttgttttgcattgaaatttg 524
Query: 181 caatagtagcacttgagagagtaattctggacgtcattcaagggcacatgagagtggcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatagtagcacttgagagagtaattctggacgtcattcaagggcacatgagagtggcat 464
Query: 241 tgcttttttgtgcatggcttctacttgctgtatctgtagtgagctaaacttcaccgtgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgcttttttgtgcatggcttctacttgctgtatctgtagtgagctaaacttcaccgtgct 404
Query: 301 tggaactctgacacctaggattttgttttttttctgtgaaaccaaggcactgtggttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tggaactctgacacctaggattttgttttttttctgtgaaaccaaggcactgtggttttg 344
Query: 361 ttgttgtcggagtatcaacctaacccactggtgagcccaagaagacagttaatactcaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttgttgtcggagtatcaacctaacccactggtgagcccaagaagacagttaatactcaga 284
Query: 421 gcaaagggtcagcctagttacattagcttaactttgggccctgctgaattctctggcctg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 gcaaagggtcagcctagttacattagcttaactttgggccctgctgaattctctcgcctg 224
Query: 481 atccaattctgaaatgttagcca 503
|||||||||||||||||||||||
Sbjct: 223 atccaattctgaaatgttagcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
