Query= MSMg01no361_d20.b1 MSMg01no361_d20.b1 CHROMAT_FILE:
MSMg01no361_d20.b1 PHD_FILE: MSMg01no361_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:13 2005
(597 letters)
>mm_chr1_31551892_31552888
Length = 997
Score = 1025 bits (530), Expect = 0.0
Identities = 580/602 (96%), Gaps = 10/602 (1%)
Strand = Plus / Plus
Query: 5 gaattcattctgattacaaatactgttttaaaatcatttttcagtcact---------at 55
|||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 197 gaattcattctgattaaaaatactgttttaaaatcattttt-agtcactattctgttgat 255
Query: 56 tctgttgataaaagtgactttaccactaatttatttcatttatgtgtatttgcctcgcag 115
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctgttgataaaagtgactttacaactaatttatttcatttatgtgtatttgcctcgcag 315
Query: 116 ttttgatccaagtcatgatgccctcaaaacaattacaaatggtataatttccgcttatat 175
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 ttttgatccaagtcatgatgccctcaaaacaattacaaatggtataatttctgcttatat 375
Query: 176 ttttgtattcacatgtctgttttcatacttgaaaccactctcatgacacacatacacagt 235
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 ttttgtattcacatgtctgttttcatacttgaaaacactctcatgacacacatacacagt 435
Query: 236 aaccaaatgcaaaatgtgagtgtaaagaaatctagctcttccccctgtaggtgaatagtc 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 436 aaccaaatgcaaaatgtgagtgtaaagaaatctagctcttccccctgtaggtgaatagcc 495
Query: 296 tgtatcccaatcataatgttttattacccatatcattgtcctaggctgacagtatttata 355
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 496 tgtatcccaatcataatgttttattacccatatcattgtcttaggctgacagtatttata 555
Query: 356 gacagtgataaaattagctatcccttttcagacattttattcacagcatacatgctgctg 415
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 556 gacagtgataaaattagctatccattttcagacattttactcacagcatacatgctgctg 615
Query: 416 acttccagaactactgtgttttatttgttcaaacagaattcctagttttattttatcaag 475
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 616 acttccagaactactgtgttttatttgttcaaacagagttcccagttttattttatcaag 675
Query: 476 gtcttcacactttcacaactttatattatgacaaatttaagatgaaaatgcctgtacact 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtcttcacactgtcacaactttatattatgacaaatttaagatgaaaatgcctgtacact 735
Query: 536 cattggtcaactgagacttgagcagaattgtttttagatcctgttgtctgtttcacatct 595
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 736 cattggtcaactgagacttgagcagaattgtttttagatcctgttgtctgtgtcacatct 795
Query: 596 gg 597
||
Sbjct: 796 gg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_d20.g1 MSMg01no361_d20.g1 CHROMAT_FILE:
MSMg01no361_d20.g1 PHD_FILE: MSMg01no361_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:13 2005
(516 letters)
>mm_chr1_31626890_31627805
Length = 916
Score = 951 bits (492), Expect = 0.0
Identities = 510/516 (98%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 1 aactcagcaagtaagagagttatatttggaggtgagcaattatttctggtatctcatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aactcagcaagtaagagagttatatttggaggtgagcaattatttctggtatctcatgtc 512
Query: 61 ccttgaatcaacttgcacctgtgactaagaccttcttcttgggagtacaagtgcatttcg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 511 ccttgaatcaacttgcacctgtgactaagaccttcttctcgggagtacaagtgcatttcg 452
Query: 121 aacctgacctgcaatttttcttgtaataagttctcaagtatattttttctctgctactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aacctgacctgcaatttttcttgtaataagttctcaagtatattttttctctgctactta 392
Query: 181 aatatatgagtcctaattcagtctctgacctacatattttatttggcattaagtgaagaa 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aatgtatgagtcctaattcagtctctgacctacatattttatttggcattaagtgaagaa 332
Query: 241 attttcaatattaatttagtgctttgctttgagaaaaacttcaggagagtagatgggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attttcaatattaatttagtgctttgctttgagaaaaacttcaggagagtagatgggaaa 272
Query: 301 actacttccagagccagcagcataagacacagatgtgggagccaaagaagtcattcacat 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 271 actacttccagagccagcagcataagacacagatgttggagccaaagaagtcattcacac 212
Query: 361 ttcctattctgtctccctccccccctccctctccctctctctctccctctttcctcacag 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 211 ttcctattctgtctccctcccccc-tccctctccctctctctctccctctttcctcacag 153
Query: 421 ttctcactataaacagaatttgattgtaatttatgtgatattaagctaaaaaaacaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 152 ttctcactataaacagaatttgattgtaatttatgtgatattaagctaaaaaa-caaata 94
Query: 481 ggaaaatatgttggagttaccactacattttaggta 516
||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggaaaatatgttggagttaccactacattttaggta 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
