BAC Information

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BAC

Clone NameMSMg01-361F20
Chromosome1 (Build37)
Map Location 67,581,576 - 67,720,633
singlet/doubletdoublet
Overlap geneKif22-ps
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361F20.T7 (MSMg01no361_f20.b1)MSMg01-361F20.TJ (MSMg01no361_f20.g1)
ACCAG470314AG470315
length793785
length of high quality
(start - end)		423 (47 - 469)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no361_f20.b1 PHD_FILE: MSMg01no361_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:23 2005CHROMAT_FILE: MSMg01no361_f20.g1 PHD_FILE: MSMg01no361_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,720,216 - 67,720,633)(67,581,576 - 67,582,025)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCTATTTCTAGAATTTGTGGTGCCTGCAGGTTTAAGAAGATGA
CCGGAGATGTTTGGGGACCATTTCCAGAGTCTGGAACAGAACAAAAAAAT
ATGACTGTAAAAGAGCTCAGATACTCTTGCCCTTGGTATTTAACTTTGTG
AACTAGGTTATGTATCACCATTTTTAGACAGATATTCATTGAATGACAAG
CATGCCTAGATGTAGAGTTGAGTGAGGACATGCTTGAAGTAAAGGAAACA
GATAGAAAGTGGAGTCTGACTTCTTGTTGTTACAATGCAAGTCCATGTGA
AAAGTTGGAGGTTTGAACTAATGATTCTCTAAATATCTGTCATAGAATGA
CCTTATGAAGCGTGGGGGTTAGTAATGATGTGAGAATATATATGGAGAGA
AAGATTACTTACATCTTGTCCCTAAAATGATAGATTTCTGGAGTCCAGAA
TCTTGATTTCCCAATTAGCCTTTCCTATAGTTACCTTCTTGATGTTCCCA
TGCTCCTAGTAAATCCTAACCATCTCTTTGACTCTCCCCCTTTCCCTTTT
GCCACCATTTTACACCTTTTCCCCCTTTCCCATCCCTTCTTCCTTCCTTT
ACTTTTTTTCTTCTCTCCTTTTTTCCCTTTCTCCCTTTCTTTCCCCTCCT
TCCTTTTCCCTTTTTCCTTCCCCTTCTTCCCTCTTTTTCATTCCCCTTCT
CCCTACCCTTCCCCCTTTCCTTCTCTCTCTTTTTCCCTTTCTN

GCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGCTGTAAGCACATATCACAGTCA
ATTTGCAATCATGTGAAGTGGGCCCTGGAGATAGAATAAAATAGAACTCC
ATTATGCTCTTCTTAATCTCAAGGAAAAAAATAAACTGGAGCATCCTTTT
TAGCCTAGCTGTGACATCTTTTGAGTACCTTGAAGAAGTAGAAGTTTGTT
TTAAAAAACGATTATTATTTTCAAGAATATTGTATATCTCAGTGTGAAGA
GGTGACATGGGGTTTGTTGCTGCTGATGTCTTCTACTGGTCACACTGTTA
GACCTTAATCATTATATTTATTGTGCCTTGTCATATTGTTAGAATAGTTT
TCTATCTGTGCCCCGAGGTGTATAATTAAAATTGTTATTGCAATGTAGGA
AAGGAGGCAGAAATCATAGCAATTCCCAGGCATTTTCTTTTATCTAGCTT
TCGTTTTCAAATCTCAATTTTCATGTATTGGNTGTTATTAAATTTTAATC
CTTGGGCTTTTTCTTATTAGAGAAAAAAGATAAGAAGCNNAGGTAGTTTT
GATTTTTATTCTTACAAATTTGAGTTTTGGATCTAACCAAACCCGATGAA
TTGGCTTACAGGCCTTGGAATCACCCAAAATAATTGTTTATTTAGAAATG
GAGACAAATATTTTTAAGGGGAAAAAGGCCCTTTGAAAATAATTTGGGTT
ACATTGCCCGCCCACCCACAAAGAAAGGTTTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_f20.b1 MSMg01no361_f20.b1 CHROMAT_FILE:
MSMg01no361_f20.b1 PHD_FILE: MSMg01no361_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:23 2005
         (423 letters)



>mm_chr1_67720012_67720834
          Length = 823

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgctatttctagaatttgtggtgcctgcaggtttaagaagatgaccggagatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattctgctatttctagaatttgtggtgcctgcaggtttaagaagatgaccggagatgt 563

                                                                       
Query: 65  ttggggaccatttccagagtctggaacagaacaaaaaaatatgactgtaaaagagctcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttggggaccatttccagagtctggaacagaacaaaaaaatatgactgtaaaagagctcag 503

                                                                       
Query: 125 atactcttgcccttggtatttaactttgtgaactaggttatgtatcaccatttttagaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atactcttgcccttggtatttaactttgtgaactaggttatgtatcaccatttttagaca 443

                                                                       
Query: 185 gatattcattgaatgacaagcatgcctagatgtagagttgagtgaggacatgcttgaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatattcattgaatgacaagcatgcctagatgtagagttgagtgaggacatgcttgaagt 383

                                                                       
Query: 245 aaaggaaacagatagaaagtggagtctgacttcttgttgttacaatgcaagtccatgtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaggaaacagatagaaagtggagtctgacttcttgttgttacaatgcaagtccatgtga 323

                                                                       
Query: 305 aaagttggaggtttgaactaatgattctctaaatatctgtcatagaatgaccttatgaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaagttggaggtttgaactaatgattctctaaatatctgtcatagaatgaccttatgaag 263

                                                                     
Query: 365 cgtgggggttagtaatgatgtgagaatatatatggagagaaagattacttacatcttg 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 262 cgtgggggttagtaatgatgtgagaatatatatggagagaaagattaattatatcttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_f20.g1 MSMg01no361_f20.g1 CHROMAT_FILE:
MSMg01no361_f20.g1 PHD_FILE: MSMg01no361_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:23 2005
         (450 letters)



>mm_chr1_67581376_67582225
          Length = 850

 Score =  862 bits (446), Expect = 0.0
 Identities = 449/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgtaagcacatatcacagtcaatttgcaatcatgtgaagtgggccctggagataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgtaagcacatatcacagtcaatttgcaatcatgtgaagtgggccctggagataga 260

                                                                       
Query: 61  ataaaatagaactccattatgctcttcttaatctcaaggaaaaaaataaactggagcatc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaatagaactccattatactcttcttaatctcaaggaaaaaaataaactggagcatc 320

                                                                       
Query: 121 ctttttagcctagctgtgacatcttttgagtaccttgaagaagtagaagtttgttttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttagcctagctgtgacatcttttgagtaccttgaagaagtagaagtttgttttaaa 380

                                                                       
Query: 181 aaacgattattattttcaagaatattgtatatctcagtgtgaagaggtgacatggggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacgattattattttcaagaatattgtatatctcagtgtgaagaggtgacatggggttt 440

                                                                       
Query: 241 gttgctgctgatgtcttctactggtcacactgttagaccttaatcattatatttattgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgctgctgatgtcttctactggtcacactgttagaccttaatcattatatttattgtg 500

                                                                       
Query: 301 ccttgtcatattgttagaatagttttctatctgtgccccgaggtgtataattaaaattgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgtcatattgttagaatagttttctatctgtgccccgaggtgtataattaaaattgt 560

                                                                       
Query: 361 tattgcaatgtaggaaaggaggcagaaatcatagcaattcccaggcattttcttttatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgcaatgtaggaaaggaggcagaaatcatagcaattcccaggcattttcttttatct 620

                                         
Query: 421 agctttcgttttcaaatctcaattttcatg 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 agctttcgttttcaaatctcaattttcatg 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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