BAC Information

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BAC

Clone NameMSMg01-361I11
Chromosome1 (Build37)
Map Location 101,227,382 - 101,227,730
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361I11.T7 (MSMg01no361_i11.b1)MSMg01-361I11.TJ (MSMg01no361_i11.g1)
ACCAG470435AG470436
length738771
length of high quality
(start - end)
174 (108 - 281)423 (84 - 506)
definitionCHROMAT_FILE: MSMg01no361_i11.b1 PHD_FILE: MSMg01no361_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:36 2005CHROMAT_FILE: MSMg01no361_i11.g1 PHD_FILE: MSMg01no361_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTATTTTTTTGCGGCGCTAAACCACTCACTTTCCGGAGAGG
ATCCGCGGAATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGCTA
GGCACAGTGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCTCGGCACA
CACGGCTCTCCTCATAGATTACTGGCGGCATGCACGCGATTGCTCGCAGC
ACATACCAGCTCTCCACACAAGGGCAGCCACATTCATTAAAGAAACTTTA
GTAAAGCTCAAAGCACACATTGCACCTCACACAATAATCAGTGCGAGACT
TCAACACACCAATTTCACCAATGCACAGATCATGAAAACAGAAACTAAAC
TGGGACACACTGAAACTATCAGAAGTGATGAAACACATGGATCTGACAGA
TATCTACATAACATTTTATCCCAAAACACATGGATATACCTTTTTCTCAA
TACCTCATGGTACCTTTCTCCAATATTGACCCACATACTAGGTCACATAA
CAGGCCTCTACCCATTGTTTTCTATTGCCACTGTTCCATTGCCTCCTATT
CTATCCTCCCTCCCCCATTCTCTGATTTTCCTCTATCCCTAACATTACAT
AGTTCAACTCTCACTTGGCTCCTCGAACACCCTCCCCTCTTGTCGATACC
CATGCTTTAGGCCATGATATTTTGAAATAATTGCAACGAACCTTGCCACT
TTAATTGGCACATTTAACCCCTCATTCGTACTTTTTTT
CCACTTTCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTGAATACTTCTC
AGCTATGAATAAAATAAAACAATAAAATTAGTGGATAAATGAATGGGCCT
AGAGAGTAACTTTTATGTGTCATAAATTCTTAATTCTTTCAAGATAGACA
ATGTATCATCTATTAAAAACAATGAAACATAACTGGCAAGACAGATCAGG
TGGCAAAGTATTTGCCCTGCCTGAATAAAATTAATATTCAAAACCCATAT
AAAAAGTTGGAAATGAAAGTTTATAATTATAACCTCAGTGTTAGGGTAGC
ACAGGGATGTTCTTCTGTGGGACTCTTTTGTCAGCATTTATAGCCTACTT
GGAGGTTTTCAATTCAATATCAGACCCTCTCACAAAATAACTATATATAA
CTATATATATGTGTGTATGTATATATATATATATATATATATATATATAT
ATATAATATCACCTTCTCCCCTTTTCTATTCTTTTTTCCCCGCTTCTTGC
CACTTTATTTTTCCTCCCCTTTTTACGATTCTTTTCTTCTATTTTTTTTT
TGACTCTTTTATCTCCCTCACCCCTTACAACCTATTTTCTTCTTTTTACA
CCTCTTTAACATTCAACTCTTATGTATTTATTTTCCCTCTTCTTCTACCC
TATTTTCTCTCTTACCTCTCCCTTTCCCATCTTTCTATACCCCCATTCTC
TCTACATCTATTCTTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_i11.g1 MSMg01no361_i11.g1 CHROMAT_FILE:
MSMg01no361_i11.g1 PHD_FILE: MSMg01no361_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:36 2005
         (423 letters)



>mm_chr1_101227382_101228204
          Length = 823

 Score =  623 bits (322), Expect = 0.0
 Identities = 343/350 (98%), Gaps = 2/350 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctgaatacttctcagctatgaataaaataaaacaataaaattagtggataaatgaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atagctgaatactgctcagctatgaataaaataaaacaataaaattagtggataaatgaa 290

                                                                       
Query: 61  tgggcctagagagtaacttttatgtgtcataaattcttaattctttcaagatagacaatg 120
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 289 tgggcctagagagtaacttttatgtgtcataaagtcttaattctttcaaggtagacaatg 230

                                                                       
Query: 121 tatcatctattaaaaacaatgaaacataactggcaagacagatcaggtggcaaagtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tatcatctattaaaaacaatgaaacataactggcaagacagatcaggtggcaaagtattt 170

                                                                       
Query: 181 gccctgcctgaataaaattaatattcaaaacccatataaaaagttggaaatgaaagttta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 169 gccctgcctgaataaaattaatattcaaaacccatataaagagttggaaatgaaagttta 110

                                                                       
Query: 241 taattataacctcagtgttagggtagcacagggatgttcttctgtgggactcttttgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 taattataacctcagtgttagggtagcacagggatgttcttctgtgggactcttttgtca 50

                                                             
Query: 301 gcatttatagcctacttggaggttttcaattcaat-atcagaccctctca 349
           ||||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 49  gcatttatagcctacttggaggttttcgattcaatga-cagaccctctca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)