Query= MSMg01no361_l13.b1 MSMg01no361_l13.b1 CHROMAT_FILE:
MSMg01no361_l13.b1 PHD_FILE: MSMg01no361_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:50 2005
(569 letters)
>mm_chr1_135770003_135770972
Length = 970
Score = 1011 bits (523), Expect = 0.0
Identities = 560/578 (96%), Gaps = 11/578 (1%)
Strand = Plus / Plus
Query: 1 tgcccacacagagctgccgacgacagggaggggaagcacagtanagatccactgagcata 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tgcccacacagagctgccgacgacagggaggggaagcacagtaaagatccactgagcata 260
Query: 61 accatccaatcaacctctagtgaaggcttggaatgtgcaaggtgacaatcgaggacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatccaatcaacctctagtgaaggcttggaatgtgcaaggtgacaatcgaggacaaaa 320
Query: 121 atggccaagacatgctgtcctggttcatagaagttcatagtcttctaagagaaagcttgt 180
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaccaagacatgctctcctggttcatagaagttcatagtcttctaagagaaagcttgt 380
Query: 181 aaacaagcaaattataaataccatgagagaaatgcagcagcaggcactcttgcatggtat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaagcaaattataaataccatgagagaaatgcagcagcaggcactcttgcatggtac 440
Query: 241 aggggattgcttgtaactcagaacaggggagagaaaaattcaaagcgtgcaggcagatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggattgcttgtaactcagaacaggggagagaaaaattcaaagcgtgcaggcagatac 500
Query: 301 actagcatccaatgtccatgcctgtacttat-ttgaacactttagacaactcatatctaa 359
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 actagcatccaatgtccatgcctgtacttaacttgaacactttagacaactcatatctaa 560
Query: 360 aatggggtcaagtgtcttccttatggtcccatgactattggataatgtatctatcatctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatggggtcaagtgtcttccttatggtcccatgactattggataatgtatctatcatctt 620
Query: 420 caatccagggtctggcacctagttggcacttaataaattatagctattaatgagagacat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatccagggtctggcacctagttggcacttaataaattatagctattaatgagagacat 680
Query: 480 tgattt--------aaaaaaaatttagctgcaacaaaatatctcatcatggaactgccct 531
|||||| |||||| || |||||||||||||||||||||| ||||||||||||
Sbjct: 681 tgatttttttttttaaaaaatat--agctgcaacaaaatatctcatcgtggaactgccct 738
Query: 532 ttgtaatgtataagacactctcagatccattatctcaa 569
||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttgtaatgtataagacactctcagatccattatctcaa 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_l13.g1 MSMg01no361_l13.g1 CHROMAT_FILE:
MSMg01no361_l13.g1 PHD_FILE: MSMg01no361_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:51 2005
(546 letters)
>mm_chr1_136010340_136011285
Length = 946
Score = 824 bits (426), Expect = 0.0
Identities = 454/470 (96%), Gaps = 12/470 (2%)
Strand = Plus / Minus
Query: 43 agagagagacagacagacagac-gacagacagagacagagacacagagagagagagagac 101
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 734 agagagagacagacagacagacagacagacagacacagagacacagagagagagagagac 675
Query: 102 agcgagaaccatttattcctcacagccccaaaccatgacagatctgagcatctgagaccc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agcgagaaccatttattcctcacagccccaaaccatgacagatctgagcatctgagaccc 615
Query: 162 actgaggaataacccctattagaaagacaggaacacagaacacggctggggggcggctgg 221
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 614 actgaggaataacccctattagaaagacaggaacacagaaca-----------cggctgg 566
Query: 222 gaggcacgagaagtgcttgcttccagatcccgagacccacgtaaaggcaaagtgcatgtg 281
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 gaggcacgtgaagtgcttgcttccagatcccgagacccacgtaaaggcaaagtgcgtgtg 506
Query: 282 acgactcgcctgtgatctcagtgctcagaggacaggaaatccccagaacaagctgttggt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acgactcgcctgtgatctcagtgctcagaggacaggaaatccccagaacaagctgttggt 446
Query: 342 ccaagtgtttgaaaagagaccttgcatcagagtggcccacacctttaatctcagcacttg 401
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ccaagtgtttgaaaagagaccttgcatcagagtggcccacacctttaatcccagcacttg 386
Query: 402 ggaggagtcagaggtaggtggatctgactttggaggctagcctggtctacagagagagtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggagtcagaggtaggtggatctgactttggaggctagcctggtctacagagagagtt 326
Query: 462 ccaggacagccagagctgcacagtgaaaccctggagagagaaagagagag 511
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaggacagccagagctgcacagtgaaaccctggagagagaaagagagag 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
