Query= MSMg01no361_m01.b1 MSMg01no361_m01.b1 CHROMAT_FILE:
MSMg01no361_m01.b1 PHD_FILE: MSMg01no361_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:53 2005
(445 letters)
>mm_chr1_115097205_115098047
Length = 843
Score = 762 bits (394), Expect = 0.0
Identities = 430/444 (96%), Gaps = 8/444 (1%)
Strand = Plus / Plus
Query: 5 gaattcctaaattac-c-aatcatagaggctatattcactgtacacattcaatcaaagaa 62
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaa--acacaaatcatagaggctatattcactgtacacattcaatcaaagaa 262
Query: 63 gacaacaacaacaacataattccaacccaaagaaaatacatatgcctggatgctaagatc 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 g---acaacaacaacataattccaacccaaagaaaatacatatgcctggatgctaagatc 319
Query: 123 atgtgtttaattaattgctgaactaaagggaaaatcaaaattagaattccaacaggaagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtgtttaattaattgctgaactaaagggaaaatcaaaattagaattccaacaggaagc 379
Query: 183 cttcataaaatggcaaggcagaatgttgttcccatagccccaatagagcaatatcaaata 242
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 cttcataaaatggcaaagcagaatgttgttcccatagctccaatagagcaatatcaaata 439
Query: 243 ctaaactaacataaagaaagcatggggttctaaaatctaatattcatccatttcctaagt 302
|||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 440 ctaacctaacataaagaaagcatggggttctaaaacctaatattcatcaatttcctaagt 499
Query: 303 gaagtacataaacccagcagcagtgcccacgacttctagaatagactgcaaaggcaatag 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaagtaaataaacccagcagcagtgcccacgacttctagaatagactgcaaaggcaatag 559
Query: 363 cctggatcactcatat-gtgacaaggcttaaatttcattaacaaaatcatcttcattttt 421
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctggatcactcatattgtgacaaggcttaaatttcattaacaaaatcatcttcattttt 619
Query: 422 ctgtcttttattttcctatttttg 445
||||||||||||||||||||||||
Sbjct: 620 ctgtcttttattttcctatttttg 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 843
Length adjustment: 10
Effective length of query: 435
Effective length of database: 833
Effective search space: 362355
Effective search space used: 362355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_m01.g1 MSMg01no361_m01.g1 CHROMAT_FILE:
MSMg01no361_m01.g1 PHD_FILE: MSMg01no361_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:53 2005
(412 letters)
>mm_chr1_115280949_115281760
Length = 812
Score = 766 bits (396), Expect = 0.0
Identities = 408/412 (99%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 1 tcatgctttttagcgggcgtctgccctataattgcttgtgtttaaatacagtccgaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcatgctttttagcgggcgtctgccctataattgcttgtgtttaaatacagtccgaacag 362
Query: 61 gaaagatcacatccattattaaaactatgtatttccccttgtttaattttttattttgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaagatcacatccattattaaaactatgtatttccccttgtttaattttttattttgtg 302
Query: 121 aaggtttatttcttatttatttctgtttctgtttatgtgtgtgtaccagaagtggggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggtttatttcttatttatttctgtttctgtttatgtgtgtgtaccagaagtggggtaa 242
Query: 181 tgtggcctatatatgtgtttgcctctggagtacagttagttttggaccctctggaactgg 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 241 tgtggcctatatatgtgtttgcctctggagtacagttagttttggatgctctggaactgg 182
Query: 241 actgataggcagatataagctgtctgatatgcattttgggaaatgaatctgggtgctctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actgataggcagatataagctgtctgatatgcattttgggaaatgaatctgggtgctctg 122
Query: 301 caaaagagatagcaccatttaaccactgagccacttcggctcctctttttcttttttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 caaaagagatagcaccatttaaccactgagccacttcggctcctctttttc-tttttttt 63
Query: 361 ttttaaacataaactttgaagcactatacaaaacacccattttaagatggac 412
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tttaaaacataaactttgaagcactatacaaaacacccattttaagatggac 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
