BAC Information

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BAC

Clone NameMSMg01-361M03
Chromosome1 (Build37)
Map Location 135,261,081 - 135,261,582
singlet/doubletsinglet
Overlap geneEtnk2
Upstream geneTmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1
Downstream geneSox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361M03.T7 (MSMg01no361_m03.b1)MSMg01-361M03.TJ (MSMg01no361_m03.g1)
ACCAG470607AG470608
length758791
length of high quality
(start - end)
505 (65 - 569)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no361_m03.b1 PHD_FILE: MSMg01no361_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:53 2005CHROMAT_FILE: MSMg01no361_m03.g1 PHD_FILE: MSMg01no361_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCCTGAGACCTTCTTCACGTGGCCTCAGGCTAG
CTCTGAGCAACGCCCCTTTTGACCCCCACCCCATTTTCTTCCCACCTCAG
CTGAATACTTTGTCCCACACACACACCTGTGGGCAGAACTGCCCACTGCA
AGCCCCTAGCTTACTCCCTCCCTCGCTGTCCTGCATTCTCTTAAAAACCT
ACCCAGCCCTACACCGCTGACAGCCTGCTGTGGAGGGTTCGGGCCCCATG
TCATTGGCCTTCTGAGTATGGAAGGGGCAGCTCTAAGGAGAATCTGGGCT
GAATGTGGTAACATTTTCAGAAGACCTGGTCAGGAACAGACAGTGAAGGC
ATCAAGCCATATTTGAGATTAAACCCAGCACTGCATACCAGATGCTAATC
TGGACCCCCACTAGGCCTGTCGTCTCACCTAGAAGGGGTGGGTCCCCTGA
AGTCCCATCCAGCTCTGCCCCATAGCGCCCATAAACCTTTAGTTCAGGGT
TCCTCCCTCCTTATCACCCTGTCCAGAGAGTCTGGTCTCCCACTCATATT
GTCTCCTGTTCCTCCTGGAGTGGAAATCAGAGATTCAAGGAACTTCTGGC
CACCAAATCCCTGCGCAACAATGCCATTTTCCATACTTCTCCTTGATCTT
TAAGCCACTGGCTAAAAGCACGGATATACCATATCAGCATATCCCCTGGC
CTTGACTT
CCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATTCCATCCAGGCAT
GGTCTTTCTTTGTTTGTTTGTTTAAAATTACTGTTTGAACTGTTTACTTA
ATCTTGGCTTAATTTTGGTAGGTCATAGACATCTAGAAAGATATCCATTT
CTTTTGTATTTTTCCTGTTTAGGAGCGTATGAGTTTTTGAGGGACATCCT
TATAACTTGCTGAGTGTTGTTAGTATGTATTGTTTTGTTTTTGAGACAGG
GTCTCCCTAATGGAGTCTCTGTGGTCTGCAGCTTACGATGTAGACCAGCC
TGGCCTTGAACTGATACCAATGCTGCCTATGCTTCTGAGATTAAGTGTGC
ACCATCTCACCTGGTTGGCTGCTCTCTATTGTAAAGTCTCTCTTCACTTC
TAATGTTACTAACTTGAGTCTTTTCTCCTTTTTTTGCTTATTTCCCTAAT
TTTTTACTATTCTCTTCACTTTACTTCTTTCTCCATTGACCCTTCATTTT
TCCCTTCTTTCCTCGTTTTGTATCTTTTCTTATCCCCCCTCCTGTTTCGC
TTCCTTTTCCTTCATCTGTTTTTATCCGCCTGTTTCCGCCTTATCCCCTT
TCCTCTATTTTTTTTCTTCTATCCCCCCTTCTGCCTCCCCATCTCACCAC
TTTTCTTTCCTTTCCTCTCCCCTTTTTTCCCCTTTCCCCCTCTTTCACTC
TTTTATTTTTCCCTTTTCTCTTTTCCCTCTTCTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_m03.b1 MSMg01no361_m03.b1 CHROMAT_FILE:
MSMg01no361_m03.b1 PHD_FILE: MSMg01no361_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:53 2005
         (505 letters)



>mm_chr1_135260878_135261782
          Length = 905

 Score =  940 bits (486), Expect = 0.0
 Identities = 498/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ccctgagaccttcttcacgtggcctcaggctagctctgagcaacgccccttttgaccccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccctgagaccttcttcacgtggcctcaggctagctctgagcaacgccccttttgaccccc 263

                                                                       
Query: 64  accccattttcttcccacctcagctgaatactttgtcccacacacacacctgtgggcaga 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actccattttcttcccacctcagctgaatactttgtcccacacacacacctgtgggcaga 323

                                                                       
Query: 124 actgcccactgcaagcccctagcttactccctccctcgctgtcctgcattctcttaaaaa 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgcccactgcgagcccctagcttactccctccctcgctgtcctgcattctcttaaaaa 383

                                                                       
Query: 184 cctacccagccctacaccgctgacagcctgctgtggagggttcgggccccatgtcattgg 243
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 cctacccagccctacacccctgacagcctgctttggagggttcgggccccatgtcattgg 443

                                                                       
Query: 244 ccttctgagtatggaaggggcagctctaaggagaatctgggctgaatgtggtaacatttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttctgagtatggaaggggcagctctaaggagaatctgggctgaatgtggtaacatttt 503

                                                                       
Query: 304 cagaagacctggtcaggaacagacagtgaaggcatcaagccatatttgagattaaaccca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagaagacctggtcaggaacagacagtgaaggcatcaagccatatttgagattaaaccca 563

                                                                       
Query: 364 gcactgcataccagatgctaatctggacccccactaggcctgtcgtctcacctagaaggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcactgcataccagatgctaatctggacccccactaggcctgtcgtctcacctagaaggg 623

                                                                       
Query: 424 gtgggtcccctgaagtcccatccagctctgccccatagcgcccataaacctttagttcag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgggtcccctgaagtcccatccagctctgccccatagcgcccataaacctttagttcag 683

                                 
Query: 484 ggttcctccctccttatcaccc 505
           ||||||||||||||||||||||
Sbjct: 684 ggttcctccctccttatcaccc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)