Query= MSMg01no361_n16.b1 MSMg01no361_n16.b1 CHROMAT_FILE:
MSMg01no361_n16.b1 PHD_FILE: MSMg01no361_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:01 2005
(573 letters)
>mm_chr1_132647843_132648815
Length = 973
Score = 963 bits (498), Expect = 0.0
Identities = 545/570 (95%), Gaps = 17/570 (2%)
Strand = Plus / Plus
Query: 5 gaattcatcatgatcc-actttcccactactcttaggatacagaccaaaatatctttttt 63
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcatcatga-ccaactttcccactactcttaggatagagaccaaaatatctttttt 263
Query: 64 ctaaattacatctatctatttatttgtgtactgcacatgctgtaggacatacacagaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaaattacatctatctatttatttgtgtactgcacatgctgtaggacatacacagaagt 323
Query: 124 aggagcacactttagggatagaactcaggtcatcagacttgacactaagtacctcaactc 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 324 aggagcacactttagggatagaactcaggtcatcagacttgacaccaagtacctccactc 383
Query: 184 actgaaccatcttactgatcccagattaaaactcgtaaacaccgactccaaactgtgtaa 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgaaccatctcactgatcccagattaaaactcgtaaacaccgactccaaactgtgtaa 443
Query: 244 gttccagtataacctgccttttccctcctcagttgcaatcatctttctagtttacagaac 303
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 gttccagcataacctgccttttccctcctcagttgcaatcacctttctagtttacagaac 503
Query: 304 tgtatgcttcctccaaaagcatttgctcatagatattttgctaacgtcaatgccattgtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 tgtatgcttcctccaaaagcatttgctcatagatattttgctaacgtcaatgccactgtt 563
Query: 364 agacagagctccgtaggatgagcaagcaatgccgtattactccatattgctcagcactct 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agacagagctccataggatgagcaagcaatgccgtattactccatattgctcagcactct 623
Query: 424 gcatgacgtaagcacacagtgacatctgttgaacaacacatgattaaatagggtgcagtg 483
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 gcatgacgtaagcacacagtgacatctgttgaacaaca---------------tgcagtg 668
Query: 484 tgctacaaaaggtcatcattcctagaattcaaacaaaaggtggggcgcttttgattctcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgctacaaaaggtcatcattcctagaattcaaacaaaaggtggggcgcttttgattctcc 728
Query: 544 aagccttaggtgcatctttttaatttttgt 573
||||||||||||||||||||||||||||||
Sbjct: 729 aagccttaggtgcatctttttaatttttgt 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_n16.g1 MSMg01no361_n16.g1 CHROMAT_FILE:
MSMg01no361_n16.g1 PHD_FILE: MSMg01no361_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:01 2005
(560 letters)
>mm_chr1_132848017_132848976
Length = 960
Score = 1046 bits (541), Expect = 0.0
Identities = 557/565 (98%), Gaps = 5/565 (0%)
Strand = Plus / Minus
Query: 1 tcatcctagctggctgcatggcccttcagctaccgagggtcaaaactgccaaatggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tcatcctagctggctgcatggcccttcagctaccgagggtcaaaactgccaaatggaaaa 856
Query: 61 gaaaatcaacccccttccatatttatatggttttaatagaaaacaatattgtaaataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaaaatcaacccccttccatatttatatggttttaatagaaaacaatattgtaaataaaa 796
Query: 121 attttggagataccaggtgtggtggtgcatgactttaatcccagcactaccgagcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 attttggagataccaggtgtggtggtgcatgactttaatcccagcactaccgagcagaag 736
Query: 181 caggtggatctctgtgagttcaaggccagcctggtctacagagtgagttccaggacagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caggtggatctctgtgagttcaaggccagcctggtctacagagtgagttccaggacagat 676
Query: 241 aggaatacccagagaaaccctgtcatgaaaaacaaaaacaaacaaacaacaacaacaaca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agggatacccagagaaaccctgtcatgaaaaacaaaaacaaacaaacaacaacaacaaca 616
Query: 301 aagtcccttgggagcacgcagtactaggcagtaatagacaccatctgtgaatggaatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aagtcccttgggagcacgcagtactaggcagtaatagacaccatctgtgaatggaatgga 556
Query: 361 tacaggactagtaaagtgtcagaacacagtccaataatggagtcctgtgagaattcagag 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 555 tacaggactagtaaagtgtcagaacacagtccaacaatggagtcctgtgagaattcagag 496
Query: 421 tgcttgtgagaaagctcc-----aaacaaaacaaaacaccccaaaacaaaaacaccccaa 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgcttgtgagaaagctccaaacaaaacaaaacaaaacaccccaaaacaaaaacaccccaa 436
Query: 476 caacaacattaaaaacaaaacaaaacaaacaaaacaaaccaagacaagagacttgtgacc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caacaacattaaaaacaaaacaaaacaaacaaaacaaaccaagacaagagacttgtgacc 376
Query: 536 tcagtttcttcaaaacacataatcg 560
||||||||||||| |||||||||||
Sbjct: 375 tcagtttcttcaagacacataatcg 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
