BAC Information

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BAC

Clone NameMSMg01-361P09
Chromosome1 (Build37)
Map Location 20,513,575 - 20,514,038
singlet/doubletsinglet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361P09.T7 (MSMg01no361_p09.b1)MSMg01-361P09.TJ (MSMg01no361_p09.g1)
ACCAG470761AG470762
length747835
length of high quality
(start - end)
464 (67 - 530)44 (163 - 206)
definitionCHROMAT_FILE: MSMg01no361_p09.b1 PHD_FILE: MSMg01no361_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:09 2005CHROMAT_FILE: MSMg01no361_p09.g1 PHD_FILE: MSMg01no361_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGAATTCCGTGTGAGGTTTTATGTGGAAGGAAGTAACATCTCTG
ACTCAGTCATTCTTTTGGGGTCCTTGAAATGTGAACTTGAAGTACAATTT
TTTGGTGATAGCATGAACCTGTCTGGGTGCTTTTTTCCTCTCCATAGTTT
GGAAGCCGGGGTCTATACTCTCCAAGTTCGTCACAAGAGGATGGGGTTTG
CCAATATGTCTGTGGTACCTCAGAAATTTGAGTTGTCACCTCAGATTATT
GCCATCTTCCCAACACATGGGTCTAAATGTGGTGGGACAGTACTTACTGT
GAAGGGCATGGCCTTCAGTTCCAGAAAGAGGTCAGTTCATGTTGACATTT
CAGGCCCTTTTGCTTGCATGATTTTGAGTTTGGAAGACCACACAGTCCTA
TGCCAGACCAGATTTGTGGGTGACCAATTTTCTGAAGCATCACTGGCTCT
AAACATCACAGTTCTGGTCAATGGGCTGACCAGCAAGCGTAAGGTGAACT
GTACACTCTTCATAGAGGAAGCAGCAACTCCTATTGTGGATGCTTTGACT
ATAAGCATCAGTGGGTCTCTAACCATGGTGCTGATGAGAGGCCGTAGGTT
ACTTACCACTGTTGATGAGCCAACACCATTTGTGGACGATCAACTTCTCT
GCCCCACATCGCTCCTTAATACCAGCTCTGTGGCTTGCTACAAAATA
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGTCCTATGAAGGCTCAATAGA
TGCCCCAGTATAGGGGAACGGGGGGCAGGGAGGCGGGTGTGGGTGGGTGG
AAGAACACCGTTATAGAAGTAGGGGGAAGGAGGATGGGATAGAGGGTTTC
CGGGGGGTGGTTGNNNCTTTTTTTNTTTTNNTTTTCTTCTCGTTTCCCTT
TTTTCCTCTTCTCCTTTCTTTTCTTCCCCTCTTTCTTCCCCCCCTTCCTT
TTCCCTTCCTCCCCTTTTTCTTTGCCTTTGTTTCTTTTCTCTTCCCCCTT
TCTTTTTTTTTTTTTCTTTCCGTCGTTCCTCTTTTGTCCCTTTCTCCCCC
TCTCCCGTTATTCCTCCCTTTCCTGTTCTTCCCCTTTGCTTTTTTGTTCT
TTTGTCCCCTTTCTCCTTTTTCGTTTTTTTTTGTCTGCCTCTCTTCCTTT
GTCTTCTTTTTCTTTCCCTTTTGTCCCTTCCTCTTTTTTTCCCTCTCCTT
TTTTTTTTTTCTCCCCTCTTCCTCTTTTTCTCCCTTGCCCCTTCCCCTCT
ATTTCTGTCTGTCCCCCTTCTATCTTTCCCTTTTTCCTTTTTTTTTTACC
CCTTTTTCCTTCTCTTTTTCTCCTCTTTCTTTTTTTCCCCTCTTATTTCC
CCCTCCTTTCTCCCTTTTTTTCCCCTTTTCCCCCCTCTCCACTTCTTCCC
CCCTTTCTCTCTTCCCCCCCCTTTTCCCCCCCTGCCTTCTCTCCCTCTTT
CCTCCCTCTTTTTCCTGCCTTCTATCCCTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_p09.b1 MSMg01no361_p09.b1 CHROMAT_FILE:
MSMg01no361_p09.b1 PHD_FILE: MSMg01no361_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:09 2005
         (464 letters)



>mm_chr1_20513375_20514238
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 462/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaggttttatgtggaaggaagtaacatctctgactcagtcattcttttggggtccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtgaggttttatgtggaaggaagtaacatctctgactcagtcattcttttggggtccttg 605

                                                                       
Query: 61  aaatgtgaacttgaagtacaattttttggtgatagcatgaacctgtctgggtgctttttt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 604 aaatgtgaacttgaagtacaattttttggtgatagcatgaacttgtctgggtgctttttt 545

                                                                       
Query: 121 cctctccatagtttggaagccggggtctatactctccaagttcgtcacaagaggatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cctctccatagtttggaagccggggtctatactctccaagttcgtcacaagaggatgggg 485

                                                                       
Query: 181 tttgccaatatgtctgtggtacctcagaaatttgagttgtcacctcagattattgccatc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttgccaatatgtctgtggtgcctcagaaatttgagttgtcacctcagattattgccatc 425

                                                                       
Query: 241 ttcccaacacatgggtctaaatgtggtgggacagtacttactgtgaagggcatggccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttcccaacacatgggtctaaatgtggtgggacagtacttactgtgaagggcatggccttc 365

                                                                       
Query: 301 agttccagaaagaggtcagttcatgttgacatttcaggcccttttgcttgcatgattttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agttccagaaagaggtcagttcatgttgacatttcaggcccttttgcttgcatgattttg 305

                                                                       
Query: 361 agtttggaagaccacacagtcctatgccagaccagatttgtgggtgaccaattttctgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agtttggaagaccacacagtcctatgccagaccagatttgtgggtgaccaattttctgaa 245

                                                       
Query: 421 gcatcactggctctaaacatcacagttctggtcaatgggctgac 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcatcactggctctaaacatcacagttctggtcaatgggctgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)