Query= MSMg01no362_b03.b1 MSMg01no362_b03.b1 CHROMAT_FILE:
MSMg01no362_b03.b1 PHD_FILE: MSMg01no362_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:18 2005
(473 letters)
>mm_chr1_23449956_23450826
Length = 871
Score = 864 bits (447), Expect = 0.0
Identities = 461/467 (98%), Gaps = 4/467 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttctcc-aagcccattgtcttttttttttttttaacagatgataaaacccaa 62
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 667 ggaattctttctccaaagcccattgtc---tttttttttttaacagatgataaaacccaa 611
Query: 63 acaataggtgaggagcaggtgtgtaaagctctgagtgttgacttgcatttggcaaaactc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acaataggtgaggagcaggtgtgtaaagctctgagtgttgacttgcatttggcaaaactc 551
Query: 123 tcaccacagagcgaaaccattagggatgctgtcagagagattgatggtgctctgcatttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaccacagagcgaaaccattagggatgctgtcagagagattgatggtgctctgcatttg 491
Query: 183 gaaactgtccttgacaaattttataaaacgtgcaattcttctccaaagacacaccatggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaaactgtccttgacaaattttataaaacgtgcaattcttctccaaagacacaccatggg 431
Query: 243 ttgtagcaaaagcacacagcacactcttttgcagagacaacgattcgattaactcaagga 302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgtagcaaaagcacacagcatactcttttgcagagacaacgattcgattaactcaagga 371
Query: 303 ggcacatctggattgaattaagacaggtctgaaataattctactgaaatgtgtcactgca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggcacatctggattgaattaagacaggtctgaaataattctactgaaatgtgtcactgca 311
Query: 363 aacagtgtatagccaagagaaagagagaagtatagaatgggatgaaagaaaggagggtct 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 310 aacagtgtatagccaagagaaagagagaagtatagaatgggatgaaagaaaggaggatct 251
Query: 423 ctaaataacatcatgaactttttgttattggatttccctttatgggg 469
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctaaataacatcatgaactttttgttattggatttccctttatgggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_b03.g1 MSMg01no362_b03.g1 CHROMAT_FILE:
MSMg01no362_b03.g1 PHD_FILE: MSMg01no362_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:18 2005
(475 letters)
>mm_chr1_23272109_23272983
Length = 875
Score = 895 bits (463), Expect = 0.0
Identities = 469/471 (99%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 1 tgttcaaacattcgtggactctaggaaacagaaagggattcccttgtatttaatcttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcaaacattcgtggactctaggaaacagaaagggattcccttgtatttaatcttgta 260
Query: 61 cttatatattttttcctattgtcatgaaaacatttctcctcctctgacactgttctcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatatattttttcctattgtcatgaaaacatttctcctcctctgacactgttctcatt 320
Query: 121 agactctaaattacctctgtgcccacttttccatgttagacagacatggaacctgggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactctaaattacctctgtgcccacttttccatgttagacagacatggaacctgggcct 380
Query: 181 agaagcttgtagagttgttcccaagctgccttgctctctcatcccagacccatgagcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagcttgtagagttgttcccaagctgccttgctctctcatcccagacccatgagcttc 440
Query: 241 acaactgccgcttgtttattgctgcttttcctgtgcttgtgctgttcacctggcctgagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaactgccgcttgtttattgctgcttttcctgtgcttgtgctgttcacctggcctgagc 500
Query: 301 tgtcttttaacttcactcgtaatgcttaactttacaagtgaaatttgagccagtcacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcttttaacttcactcgtaatgcttaactttacaagtgaaatttgagccagtcacatt 560
Query: 361 ggaaatgtcagccattcctagtggttcatttcacattcagcaaatccactgagtgcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaatgtcagccattcctagtggttcatttcacattcagcaaatccactgagtgcttat 620
Query: 421 tgactgtttaactgttatttgaatagaagtgtttttgttgtgt-ttttttt 470
||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 621 tgactgtttaactgttatttgaataaaagtgtttttgttgtgtcttttttt 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
