TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTACCCCAGGCTGGCCTAGAACTCAGAAATCCACCTGCCTCTG
CCTCCCAAGAGCTGGGATTAAAGGTGTGTGCCACCAGTGCTGTGTCATTT
AGGTGAATTATCACCACCGGGGTTCAGACCTCAGCGCAACTGGAGACCAG
CCTGTAGTGCATAGCCCAATGCCCCACAGCAGAGTGCAGGTTGGTATGGT
CCTGGAGAAGGAGCTGAGAGTTCTCCGTCTTGATATGTAGGCAGCAGGAG
ACTGTGTCACTCACTGGTAGTAGCTTGAGCTTAGGACACCTCAAAGCCTG
TGACACACAGTGTCACACTTTCTCCAACAAGGCCGCACCTCTTAGTAGTG
CCCCTCCCTGTGGGCTAAACATTCAACACAGGAGTCTATGGGGGCCGTTT
CTATTCAAACCACCACACGTTACTTTGGGAAGAGTGGGCTGGAAGTGTGG
CTCAGTGGCAAAGCACTTGTTTTGTCCTGAGCACAGCAGAGCAAAAACAG
AACAAACAGCACTAGGAATGGGCTAGGGAGGACTTTTCATAGTCGTGACA
TTAGGGCATCAGAGTCCCAAGCCTCCCAGGGAATGTCCTATGTCCCTCTG
GGTGCCGGACAGTGATATGTAGTGTGTAAGTATCCTTACTGCCCCATCAT
AAACATCTATTTTCCTTTTTATTCATGGGTGCTCCTCCCTTTCTGGGTGG
CCTTTCTTG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGTGTTTCCTTAAACATTTTCTCTAAAG
TAGCTATGTCGGAATCAGCCAACAAAATATCATCCATATGTTGACAAATA
ATGAATTGAAGAAATTGCCTAAGGATTATTTTTCATGGTTGTTGCACTAA
ATATTGACAAAGTTGGATTGCTTAACATGCCCTGTAGAAGATCATTCAAC
TGATATCTTTTTACAGGTTGAGTGCTATTATGAGTATGTATGGTGAAAGC
AAACCTTTACTCAACCTGATCATGCAAGGGATAGTTAAAAAGCAATCTTT
TAAATCGATTACTATCATAGGCCATGTGTTAGGTAATAAAGAAGGCAAAG
GGATTCCAAGCTGTAGTGGTTGAATTATTCTATTCACTGCTCTTAGATTT
GTTAACACTCTCTATTTTCCTGATTCTCTCTCTCTCTTTTTTTATAACAA
ATATTCCATGGTTTGGTAGACTTTTCTATATGTTTAGCCTTGTAGCAGCT
GCTTTGTACAAGCTGCTCTGTACCAGCTATTCATGTGCCTGTAAGTTTTC
CTTAGNTAAGACCACTGCTCTACCCACACAAGCTTGATAATCACCCATTT
TAAGGGTAGGGCCATTGATACTTCTACAATGCCCCCCCCCAATAAACTTG
AAAACTCAATTCCTGTTGTGGCCCTTTGTTTGACAAATGGCAAAACCTGG
GGGCTGTTTTTATGAACCAAT

Query= MSMg01no362_g12.b1 MSMg01no362_g12.b1 CHROMAT_FILE:
MSMg01no362_g12.b1 PHD_FILE: MSMg01no362_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:46 2005
         (546 letters)



>mm_chr1_184029821_184030769
          Length = 949

 Score = 1002 bits (518), Expect = 0.0
 Identities = 538/546 (98%), Gaps = 3/546 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtaccccaggctggcctagaactcagaaatccacctgcctctgcctcc 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctagaactcagaaatccacctgcctctgcctcc 263

                                                                       
Query: 64  caagagctgggattaaaggtgtgtgccaccagtgctgtgtcatttaggtgaattatcacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagagctgggattaaaggtgtgtgccaccagtgctgtgtcatttaggtgaattatcacc 323

                                                                       
Query: 124 accggggttcagacctcagcgcaactggagaccagcctgtagtgcatagcccaatgcccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accggggttcagacctcagcgcaactggagaccagcctgtagtgcatagcccaatgcccc 383

                                                                       
Query: 184 acagcagagtgcaggttggtatggtcctggagaaggagctgagagttctccgtcttgata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagcagagtgcaggttggtatggtcctggagaaggagctgagagttctccgtcttgata 443

                                                                       
Query: 244 tgtaggcagcaggagactgtgtcactcactggtagtagcttgagcttaggacacctcaaa 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 tgtaggcagcaggagactgtgtcactcactgggagtagcttgagcttaggacacctcaaa 503

                                                                       
Query: 304 gcctgtgacacacagtgtcacactttctccaacaaggccgcacctcttagtagtgcccct 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 gcctgtgacacacagtgtcacactttctccaacaaggccgcacctcctagtagtgcccct 563

                                                                       
Query: 364 ccctgtgggctaaacattcaacacaggagtctatgggggccgtttctattcaaaccacca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctgtgggctaaacattcaacacaggagtctatgggggccgtttctattcaaaccacca 623

                                                                       
Query: 424 cacgttactttgggaagagtgggctggaagtgtggctcagtggcaaagcacttgttttgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacgttactttgggaagagtgggctggaagtgtggctcagtggcaaagcacttgttttgt 683

                                                                       
Query: 484 cctgagcacagcagagcaaaaacag---aacaaacagcactaggaatgggctagggagga 540
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 684 cctgagcacagcagagcaaaaacaacaaaacaaacagcactaggaatgggctagggagga 743

                 
Query: 541 cttttc 546
           ||||||
Sbjct: 744 cttttc 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 949
Length adjustment: 10
Effective length of query: 536
Effective length of database: 939
Effective search space:   503304
Effective search space used:   503304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)