BAC Information

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BAC

Clone NameMSMg01-363A02
Chromosome1 (Build37)
Map Location 60,600,391 - 60,600,846
singlet/doubletsinglet
Overlap geneRaph1
Upstream geneGm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, LOC100043027
Downstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A02.T7 (MSMg01no363_a02.b1)MSMg01-363A02.TJ (MSMg01no363_a02.g1)
ACCAG471553AG471554
length720797
length of high quality
(start - end)		463 (46 - 508)233 (79 - 311)
definitionCHROMAT_FILE: MSMg01no363_a02.b1 PHD_FILE: MSMg01no363_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:35 2005CHROMAT_FILE: MSMg01no363_a02.g1 PHD_FILE: MSMg01no363_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATACTGCTTCCCATGCAACCAACCCACCCACCCATGAAAACAGA
CGTCACTAAACAAACGCTCAGCAGTATAGCCAAGAGGCCAGCCTGCATTT
TTGTTTTTAAAAAGCAAACATCATATATAGCCTCCAACATTTTAATGTGT
ACAATTCAGTGAATCTTAATTATATTCACAGTGCCACACAGCCTTCCACT
GTCAAATTCCAATATAAGTTTAGGGAAAAAAACTTAAGCTAAGCTATGCC
TTCAAAGTGTTAGGCTTCATCACTCAGGGCTCAGACCCCCTGGAGGTGTA
TTTTGGCTGCCTGTGTTCAGCCCAAGCCTGAGGCTGTTTTTCTCAGTACC
TGCAGGAAGCTCCTGAGGCCACACTCTTTTTTTTTTTTTTTTTTGCATTT
CTATACCGTTCACCCTTCTTGGTTCAGTTCTTCTTTAAAAACAAACAAAC
AAACAAACAAACAAACAAACAAACAAACGTGTGTCAGAATGCTATGTAAG
AAACAAAACTTATATACTACTTTCTCTTCCAATGACCACAAATTGTGTAC
CTGCCTACAGCATTTAGCTAACCCGCCTCTATTCATAGCTATCTGTGCAC
GTGTCTCCACAGTCCCTACCCCCATGGAGGCTGGTAGTCTCCTGGAAAAT
AAAACATATAATTTCTTTAT

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTACACCCCCT
TTTTTGATTAGGTTGTTTTGTTTTGTGTTTTTGGAGATTAGCTTCTTGAG
TTCTTTATATATTTTGGATATTAGCTCTCTATTGGATGTGGGGTTAGTGA
AGTTTTTTCCCAATCTGTAGGTTGCTGATTTGTCCTATTGATGGCGTTCT
TTGTTTTACAGAAGCTTTTTTGTTTCATGAGGCCCCATCTATCAATTGTT
GATCTTAGAGCCTGATCTGTTTTTTTTTTTGTTCAGGAAATTTCCCCTTG
TGCCAACGAGTTCGTTTCTCTCTCCAACTTTCTTTTCTATTCGATTCAGG
GTATCTGGCTTGATGTCGAGATCCTTGAGCCACTTGGATTTGAGATTTGT
GCAAGGGGACCTCCATGGATCTATTTGCTTCTTTCTACATACAGATTGCC
CTTTAGACCAGCTGCACTTATTGAAGATGCTTTTACTTTTTCCATTGGAT
GTTTATTGTCTTCCTTGTCTTATATCGTGCAGTCCCGTACTGCCTGCAGC
TTGATCCTTTATCCTCCCCTACCGACTCTTATTGGACCTTATCTTATCCT
CCTCCCGGTACCAATTTACTCTTGTCTCCTTTTACCTCCGTCAGTCCGTA
ACAGTCATAGGTTTTTGTCTGTTCGTTACGTCCTGTCCTCAATCACCACA
CTTTTCATAGTTATAATCTCCCTACAACTCTTCTGCCTTTCGCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a02.b1 MSMg01no363_a02.b1 CHROMAT_FILE:
MSMg01no363_a02.b1 PHD_FILE: MSMg01no363_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:35 2005
         (463 letters)



>mm_chr1_60600187_60601046
          Length = 860

 Score =  864 bits (447), Expect = 0.0
 Identities = 455/459 (99%), Gaps = 3/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatactgcttcccatgcaaccaacccacccacccatgaaaacagacgtcactaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatactgcttcccatgcaaccaacccacccacccatgaaaacagacgtcactaa 264

                                                                       
Query: 65  acaaacgctcagcagtatagccaagaggccagcctgcatttttgtttttaaaaagcaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaacgctcagcagtatagccaagaggccagcctgcatttttgtttttaaaaagcaaac 324

                                                                       
Query: 125 atcatatatagcctccaacattttaatgtgtacaattcagtgaatcttaattatattcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcatatatagcctccaacattttaatgtgtacaattcagtgaatcttaattatattcac 384

                                                                       
Query: 185 agtgccacacagccttccactgtcaaattccaatataagtttagggaaaaaaacttaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgccacacagccttccactgtcaaattccaatataagtttagggaaaaaaacttaagc 444

                                                                       
Query: 245 taagctatgccttcaaagtgttaggcttcatcactcagggctcagaccccctggaggtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagctatgccttcaaagtgttaggcttcatcactcagggctcagaccccctggaggtgt 504

                                                                       
Query: 305 attttggctgcctgtgttcagcccaagcctgaggctgtttttctcagtacctgcaggaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attttggctgcctgtgttcagcccaagcctgaggctgtttttctcagtacctgcaggaag 564

                                                                       
Query: 365 ctcctgaggccacactcttttttttttttttttttgcatttctataccgttcacccttct 424
           ||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||
Sbjct: 565 ctcctgaggccacactcttttttttttttttt---gcatttctatacctttcacccttct 621

                                                  
Query: 425 tggttcagttcttctttaaaaacaaacaaacaaacaaac 463
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggttcagttcttctttaaaaacaaacaaacaaacaaac 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 860
Length adjustment: 10
Effective length of query: 453
Effective length of database: 850
Effective search space:   385050
Effective search space used:   385050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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