Query= MSMg01no363_b11.b1 MSMg01no363_b11.b1 CHROMAT_FILE:
MSMg01no363_b11.b1 PHD_FILE: MSMg01no363_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:41 2005
(516 letters)
>mm_chr1_62909363_62910280
Length = 918
Score = 944 bits (488), Expect = 0.0
Identities = 510/518 (98%), Gaps = 2/518 (0%)
Strand = Plus / Plus
Query: 1 cctcagggtattgttggtggataggcaaaataatttccacctaaaaacgttttgtagttc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcagggcattgttggtggataggcaaaataatttccacctaaaaacgttttgtagttc 260
Query: 61 ttcaaaaacttgaagagttattgtcaggagacatacaaaccaacacaaatgtaaaaggtt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttcaaaaacttgaagagttattgtcaggagacatacaaaccaacacaaatgtaaaaagtt 320
Query: 121 atataaaatattcatgagatcatgacacacactagtcaaaaggtgtcacagactaaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atataaaatattcatgagatcatgacacacactagtcaaaaggtgtcacagactaaaaag 380
Query: 181 atgtcttatagtcatatcacccaccttccccaagacaaggaacagt--cttttcccacta 238
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 atgtcttatagtcatatcacccaccttccccaagacaaggaacagtcacttttcccacta 440
Query: 239 catagagccacgcgccagatgtcttctcattgatatagctgagactgttgccagcgcttc 298
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 catagagccacacgccagatggcttctcattgatatagctgagactgttgccagcacttc 500
Query: 299 tttaaggcttggggagatggtccctactgattgatgttcatgtccatgatagccaacctt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaggcttggggagatggtccctactgattgatgttcatgtccatgatagccaacctt 560
Query: 359 acctagttctatggtttggacctgcagtatctcccaaaaggcatgtgtgttaatggcatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 acctagttctatggtttggacctgcagtatctcccaaaaggcatgtgtgttaatgtcatg 620
Query: 419 gtccccagtgcaggcagtattcagaggctaagctcaggagcagcaattacttcagtgaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccccagtgcaggcagtattcagaggctaagctcaggagcagcaattacttcagtgaga 680
Query: 479 ctctttcttcatcaaacaagtaacctagtgatggactc 516
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctttcttcatcaaacaagtaacctagtgatggactc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 918
Length adjustment: 10
Effective length of query: 506
Effective length of database: 908
Effective search space: 459448
Effective search space used: 459448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_b11.g1 MSMg01no363_b11.g1 CHROMAT_FILE:
MSMg01no363_b11.g1 PHD_FILE: MSMg01no363_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:42 2005
(242 letters)
>mm_chr1_63029931_63030572
Length = 642
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%)
Strand = Plus / Minus
Query: 1 ttccttttagtatgaaagcagcctattttgtagcattcagcatggtgtccatgtgctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttccttttagtatgaaagcagcctattttgtagcattcagcatggtgtccatgtgctgat 383
Query: 61 ggaatacttcacgagagcgagcgagcgagcgtggaggggctgcaggcagataagggagag 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 ggaatacttcacgagagcgagcgagcgagcgcagaggggctgcaggcagataagggagag 323
Query: 121 aaaaggccaggctgggtgggatggagacgctattgctttctgagagtgagtgactcttgc 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 322 aaaaggccaggctgggtgggatggagatgctattgctttctgagagtgagtgactcttgc 263
Query: 181 aacattcatttccttcttggttttcttttgagtatgtgctgtttttttttttttccccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacattcatttccttcttggttttcttttgagtatgtgctgtttttttttttttccccta 203
Query: 241 ta 242
||
Sbjct: 202 ta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
