BAC Information

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BAC

Clone NameMSMg01-363G22
Chromosome1 (Build37)
Map Location 26,167,672 - 26,168,067
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363G22.T7 (MSMg01no363_g22.b1)MSMg01-363G22.TJ (MSMg01no363_g22.g1)
ACCAG471873AG471874
length822777
length of high quality
(start - end)
396 (35 - 430)212 (85 - 296)
definitionCHROMAT_FILE: MSMg01no363_g22.b1 PHD_FILE: MSMg01no363_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:08 2005CHROMAT_FILE: MSMg01no363_g22.g1 PHD_FILE: MSMg01no363_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTT
TCTAACCATATTGGAAACATCTAGGAAAAAAATAATATGTTGCCTAGCAC
TAAAGTATCTTAGTTACAGCCCACTCTTGTTCTACCTTACTATGTAAAAA
CCTATTCTCAGGCTTGTGCATTTCTGAATAGCTATTTCTCCCCAATACAA
AGCTATTGAATAGGATTGAGTGTTTCTGAATATTACTGACTTGTACATCA
TAGGGTTTTTTTGTTTGTTTTTTGTTTTTTTTTGTTTGTTTTTTGCAATA
ACAAAATGCCATCAACCCTTTGGCTTACAAACAACAGATAGCTACTTCTC
TCTATAAGAAGGAATGCAGAATCAAAGGTCAAAGTACCTGCATGATTCAT
GTCCGAAGGGGACATGTTTTTTTGCTCATAGGTTGAGTTTTCTAACTGTG
TTCTTATGGCCTGAAAAACAACGCTGCTAAATTTCTGACAACTAATCTCC
CTTTATGAGGCCCCTGGCCCCCTATTAATTGCCCTAAATTTTGGAAAGCT
CCAATTCTTAACTTTCCCCTCTTTAGCCTCGTTGATCCCCCTTCCCCATT
TTTAATATGTCGTCGCCTTCTATTTCCTTTCTTTTGCTTTCTTACAGTTT
CCCCCTATCTTCTTTCCCCTTTCCTCTCTTACGACATTCTTCACTTTTCC
TAAATCCTCTCCCTTTATCTCCTCTTTTTCTCTGCCTACTCGCATTAATC
CGCCCCTTCCACCCTTCCTTTATTTCTTCTTATTTTCCCTTCTTTTTAAC
CTCTATCTTATTCCTCACCATN
TTTTTTTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCATTGCATTTAC
TAGATTAATATTCAGAGGTTAATCAAGGAAGAAGGTTGGGAATGTAGAGG
TGTCTCAGCAGTTAGGAGATTATACTACTCCAGCAGATGAACTGAGCTCT
GTTCCCAGCATCCATATAAAAGGGCTCACACCTACCACAACTCAACACCT
ATCACAACCTACCATGCTCATGTGCACACAAATGTGTGTGTGTATGNGNG
NNNNNNNGNNNNNNNNNNNNNNNTTTTTTTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNTNNTTTTTTTTTGTTTTT
TTTTTTTTNTNNNNGGTTNNNNNNGGTTTTGGTTNNTTTNGGGTTTNTTN
TGTGGTGGGTGTTGGTTGTTTTTTTGTTTGTTTGTTNTTGTGTTTTGTTT
TTGTTTNTTTTTTGTTTGTTTTTTTTGTGTTGTGGTTTTGTGTTGTTTGT
TTGTTTTTGTTTTGTTTTTTGTTTGTGGTGTTGTTGGTTGTGGTGTTTTT
TTTTGTTTGTTTTTTTTTTTTTTTTGTTTGTTTTTTTGTGTTTTTTTGTG
GTTGTTTGGTGTTGTTTGTTGTGTTGTTTTTTTTGTTTTTTTGTTGTTTG
GTTTTGTTTTTTTTTTGTTTTTTGTGNTTGTTTGTGTTGGTTTTTGTTTG
TTTGTTTTTTTTGTTTTTTTTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_g22.b1 MSMg01no363_g22.b1 CHROMAT_FILE:
MSMg01no363_g22.b1 PHD_FILE: MSMg01no363_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:08 2005
         (396 letters)



>mm_chr1_26167646_26168442
          Length = 797

 Score =  704 bits (364), Expect = 0.0
 Identities = 388/396 (97%), Gaps = 4/396 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtttctaaccatattggaaacatctagg-aaaaaaataatatgttgcctag 63
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 422 gaattctctgtttctaagcatattggaaacatctaggaaaaaaaataatatgttgcctag 363

                                                                       
Query: 64  cactaaagtatcttagttacagcccactcttgttctaccttactatgtaaaaacctattc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cactaaagtatcttagttacagcccactcttgttctaccttactatgtaaaaacctattc 303

                                                                       
Query: 124 tcaggcttgtgcatttctgaatagctatttctccccaatacaaagctattgaataggatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcaggcttgtgcatttctgaatagctatttctccccaatacaaagctattgaataggatt 243

                                                                       
Query: 184 gagtgtttctgaatattactgacttgtacatcatagggtttttttgtttgtttttt-gtt 242
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 242 gagtgtttctgagtattactgacttgtacatcatagggtttttttgtttgtttttttgtt 183

                                                                       
Query: 243 t-ttt-tttgtttgttttttgcaataacaaaatgccatcaaccctttggcttacaaacaa 300
           | ||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 182 tgtttgtttgtttgttttttgcaataacaaaatgccatcaacccagtggcttacaaacaa 123

                                                                       
Query: 301 cagatagctacttctctctataagaaggaatgcagaatcaaaggtcaaagtacctgcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cagatagctacttctctctataagaaggaatgcagaatcaaaggtcaaagtacctgcatg 63

                                               
Query: 361 attcatgtccgaaggggacatgtttttttgctcata 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 62  attcatgtccgaaggggacatgtttttttgctcata 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space:   304956
Effective search space used:   304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)