BAC Information

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BAC

Clone NameMSMg01-363J07
Chromosome1 (Build37)
Map Location 163,148,305 - 163,148,535
singlet/doubletsinglet
Overlap geneEG640200
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117
Downstream geneEG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363J07.T7 (MSMg01no363_j07.b1)MSMg01-363J07.TJ (MSMg01no363_j07.g1)
ACCAG471984AG471985
length813755
length of high quality
(start - end)
218 (39 - 256)241 (82 - 322)
definitionCHROMAT_FILE: MSMg01no363_j07.b1 PHD_FILE: MSMg01no363_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:20 2005CHROMAT_FILE: MSMg01no363_j07.g1 PHD_FILE: MSMg01no363_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
ACAGGATTTCGAGAAACTTTTAAAATAAGAGATTCAAGAGACTATTCATT
TTAGAAGACAGAAATTATTGCTTGGAGAAGGAAGGAATCTTGGTTTTTGA
AGATAAGAACGTAATTGTCAAAATTATATATGTGTGTGTGTGTGTGTATG
TGTATATATACATAAATATATATGTATGTGTGTATATATGTGTGTGCATA
TATGTTCTTCCTCTCCCTCCCCTCCCTTCTCCCTTTNTTTTTTCCCTTTT
CTCTTTTCCCTTTCCCTTTTTTTTTTTTTTTCTTCCTTCTCCTCCCCCCC
CTTTTCTTTTTTTTTTCCCCCTTCCTCCCCTCTTCTTTTCCCTTTCCCTT
TTCCTTTTTTCCTCCCCCCCTCTCCTTCTTCCTTCCCCCTTTTCTCCCCT
TCTTTTTTTCTCTTCTTCCCTTTCTTTTCCTCCCTTTTTCTCTCTCCTCT
CTCTTCCCCTTTTTCCCCCTTTTTTTTCTCTTTTCTCTCCTTCCCCCTTT
TTCCTTTTCTCTTTTCTCTTTTCTTCCCCCCCCTTTTTTTTTCTTTCTCT
CTTCTTCCTTTTTTCTCTTCTCCTTCTCTTTTTTTTCTCCCCCTTCCTTC
CCCTTCCCTTTCTTTTCTCTTCCCCTTTTTCCTCCTCCTTTTTTTTCCTT
TTTCCCTCTCTCTTTTTTCCTTCCTTTCTTCCCCTTTTTATATTTTTCTC
CCCAACTTTTAATTTTTATTTTCTTATCCTTTCTTTACTTTCTCTCCCCC
ATTTTCTCTCTCN
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAGTACTATTTCACTG
CTATAAACAGTACAAAGCGAAGTTCTGGCTGCATACTTACTAAGCCTCTG
GGGCGGGGTGCAAACATCAGGATTAGGAGTTCAAGATTACCTTTGGCTAC
ATAGGGAGTTGAAGCTCAGCCTGGACTACATGAGACATGCCTCAAAAGAA
CAAAACCGGGTTGGAGAAATGGTTAAGTGGTTAAGAGCACTGACTGCTCT
TCCAGAGGTCCTGAGTTCAATTTTTTTTTACTGCATGGTGGCTCACAACC
ATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCCAAAGACAGCTAC
AGTGTACTAACATTAAATAAATCTTTAAAAAACCAAAACCAAAACTAAAA
GCCATTCCCCAAACATCTGCTTTAGTACTATCTTACAATACCAGGAGAAC
AGGAGCCCGAGATACTATTCCTTGATTCTGTCCTCACAATTATATTCTAG
ACAACTGACTACAGAGTATATAGAACTTTCTGTGATGAAAATGTTCTGTA
ATTTTAACTATTTAATGTAGTAACCACCTGGGTATTAGCATTTGGCATAC
ATCTAATGCTACTGAGAGAAAATTTTACTTTCCATTGGTTTTAGAAATTA
AAACCAAAATTCCAAGTGCCTCATGACAGGATGGAAAATTTCCGGGAAAA
TTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_j07.b1 MSMg01no363_j07.b1 CHROMAT_FILE:
MSMg01no363_j07.b1 PHD_FILE: MSMg01no363_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:20 2005
         (218 letters)



>mm_chr1_163148199_163148816
          Length = 618

 Score =  282 bits (146), Expect = 8e-81
 Identities = 201/234 (85%), Gaps = 26/234 (11%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatacagga--tttc-gagaaacttttaaaataagagattcaagagactattcat 61
           ||||||||||||||     | ||||||||||||||||||||| |||||||||||||||||
Sbjct: 337 gaattcatacaggaag---cagagaaacttttaaaataagaggttcaagagactattcat 281

                                                                       
Query: 62  tttagaagacagaaattattgcttggagaaggaaggaatcttggtttttgaagataagaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttagaagacagaaattattgcttggagaaggaaggaatcttggtttttgaagataagaa 221

                                                                       
Query: 122 cgtaattgtcaaaattatatat--------------------gtgtgtgtgtgtgtgtat 161
           ||| ||||||||||||||||||                    |||||||||||||||| |
Sbjct: 220 cgtgattgtcaaaattatatatatacatatatatatgtgtgtgtgtgtgtgtgtgtgtgt 161

                                                                 
Query: 162 gtgtatatatacataaatatatatgtatgtgtgtatatatgtgtgtgcatatat 215
           |||| | |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 160 gtgtgtgtatacatacatatatatgtatgtgtgtatatatgtgtgtgtatatat 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)