XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATATGATTTTCTGGAC
ATAGTACTAATGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTTCCAACCGGTTAAAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATAAAAAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCATAGGCAAATGGATGGACC
TGGAAGGCATCATCCTGAGTGAGGTAACCCAATCATAAAAGAACTCAAAT
GATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATAGCG
AGATATAAGGTACAATTTGCAAAACACATGAAACTGAATAAGAACAAAGA
CCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCACCCAT
TGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACCAAAGGATGGACCA
TCTAGTGACTGCCATATCCAGAGATCCATCCCATAATTAGCCTCCCAATG
ATGACCCCATTTCCTACACTAACAAGATTTTGCTGACAGGACACCGAAAT
AACTGTCTCCTTGGAGACTAAGCTGGGGCTCATCCTACTCTATATTAT

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGATGTGGTATCTAATTGGT
AGTTTAATGACATAACATTTAAATTAAAAAATTATACACTGACAATAATG
CTCTCAGACTAATATTTTGTTTTCAAATTGATATTTTCATTTATCCAGTT
CAAAAGGATGTGTGGTCATGTTAAAGTTTAATGATTAAGATGAAAGATTA
TAGGATAGTGCTTGCCTTGACTTGAATCCTTATTACATGACTTTTACAGG
ACAAGTTATTTTCAAATAAACTTCATATTGCTGCCTTAGCTGTGGTCTAC
ATTTTTAAATCTGCATGCCTTGTAAGACTGAAGAACAAATGGAGAAAAGA
TTATTCTGCACGTTTATAAGACTTCTTCTATATGAGATTAATATTTTGAT
AAGTAAGCTGCACTAAAATTACCCTTTTTATGAAGGAAGACCTTAACTAA
TCACTAATCAAGGAGACATAAATCAAACAGAAAGTCTAAATAAAAGAACA
GTTAAAAAGAAGAGGTCATGAATTTGAAAGAGAACAATAGGGTTATATGA
GGGCTAGAAATAAGAAATGGAAGAGAGAAATGTTGTATTTATTGTCTCAA
AAATAAAATGTATATTTTAATATTTAAAGAGAGAAAAGCACATTTTCCTG
CCTTGCTAAGCTCAAGCTTTGTTTTTTCAACCACCAGGTTTAGAAACCAC
CAT

Query= MSMg01no363_m06.g1 MSMg01no363_m06.g1 CHROMAT_FILE:
MSMg01no363_m06.g1 PHD_FILE: MSMg01no363_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:35 2005
         (652 letters)



>mm_chr1_81045691_81046746
          Length = 1056

 Score = 1129 bits (584), Expect = 0.0
 Identities = 635/656 (96%), Gaps = 11/656 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatgtggtatctaattggtagtttaatgacataacatttaaattaaaaaattatacac 60
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 668 tagatgtagtatctaattggtagtttaatgacaaaacatttaaattaaaaaattatacac 609

                                                                       
Query: 61  ----tgacaataatgctctcagactaatattttgttttcaaattgatattttcatttatc 116
               | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taattaacaataatgttctcagactaatattttgttttcaaattgatattttcatttatc 549

                                                                       
Query: 117 cagttcaaaaggatgtgtggtcatgttaaagtttaatgattaagatgaaagattatagga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cagttcaaaaggatgtgtggtcatgttaaagtttaatgattaagatgaaagattatagga 489

                                                                       
Query: 177 tagtgcttgccttgacttgaatccttattacatgacttttacaggacaag-ttattttca 235
           |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 488 tagtgcttgccttgacttgagtccttattacatgacttttacaggacaagatt-ttttca 430

                                                                       
Query: 236 aataaacttcatattgctgccttagctgtggtctacatttttaaatctgcatgccttgta 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aataaacttcatattgctgccttagctgtggtctacatttttaaatctgcatgccttgta 370

                                                                       
Query: 296 agactgaagaacaaatggagaaaagattattctgcacgtttataagacttcttctatatg 355
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 369 agactgaagaacaaatggagaaaagattattctgcatgtttataagacttcttctatatg 310

                                                                       
Query: 356 agattaatattttgataagtaagctgcactaaaattaccctttttatgaaggaagacctt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agattaatattttgataagtaagctgcactaaaattaccctttttatgaaggaagacctt 250

                                                                       
Query: 416 aactaatcactaatcaaggagacataaatcaaacagaaagtctaaataaaagaacagtta 475
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 aactaatcactaatcaaggagacataaatcatacagaaagtctaaataaaagaacagtta 190

                                                                       
Query: 476 aaaagaagaggtcatgaatttgaaagagaaca---atagggttatatgagggctagaaat 532
           ||||||||||||||||||||||||||||||||   ||  |||||||||||||||||||| 
Sbjct: 189 aaaagaagaggtcatgaatttgaaagagaacaaggat--ggttatatgagggctagaaag 132

                                                                       
Query: 533 aagaaatggaagagagaaatgttgtatttattgtctcaaaaataaaatgtatattttaat 592
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagaaatggaagagagaaatgttatatttattgtctcaaaaataaaatgtatattttaat 72

                                                                   
Query: 593 atttaaagagagaaaagcacattttcctgccttgctaagctcaagctttgtttttt 648
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 71  atttaaagagagaaaagtacattttcctgccttgctaagctcaagctttgtttttt 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1056
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1046
Effective search space:   671532
Effective search space used:   671532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)