XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGATGCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCTGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGTTTCCTCAGAAAA
CTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTCCCAACCGGTAAGAAAGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAAC
TCACATAATATGTACTCACTGATTAGTGTATATTAACCCAGAAACTTATG
ATTACCTTACATAACATACAATTTGCCAAACACCCGATATTCATTAAGAA
TGAAGACCCATGCGTGTACCCTTTGCCCCCTTCTTACAATGGGAATAAG

NNCCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGAAATTATGCCT
TTGTTGAAACTGCAGAACTCTCCTTGGAACAGACACCATGTTTCTTGACA
GGGGAAGCCAGCCAGGGAGCAGAGCAGGCAAGCAAGGCTGGCAGCCAGTG
ATCTTATTGAATATTGTTTGCCATAGAGAGATACAGGAGGCTGACTGCCC
CAGAGGATTGCTAACAGGCAGCATATCTAAAAAGAAAATTTTCTTTGCAG
TGAAAGAGCAAAAATTCTGATATCTGAAAACTACTTTTTCCCCCAGTTGA
AAGAATGTCCCGAAAAATAAGTCTTCCAAGAAGACCCAAATTATCCTGTG
AGAAATAAAAAGAAGACAGCACATCACCAGTAGAAGATCAAAATAATCTC
GGTGGGGAAGAGATATATAAAGCTAAGTAAATAAGGACTATTATGAATGT
CTCCTCATGAAATATAGAAGGTGAACAAATATTATTAACATGTTGTCATA
TAAGGGAATATCATGAAGCATGAATATAANAATAGAGAACATATATTTTT
ATCTGCTGNAAAAATGTTGAGAGATTAATATTGAACTGCCCTACTGGTGA
AATAAACCAAATTAATTAATTATGAAAAATCTGANGTACCAGGTGGGGGG
CATGGGCCTTTCTACAAAAAAGTGGCTGGCCGGAAAAGAAGGGGGAAGTT
TAAA

Query= MSMg01no363_n07.g1 MSMg01no363_n07.g1 CHROMAT_FILE:
MSMg01no363_n07.g1 PHD_FILE: MSMg01no363_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:40 2005
         (487 letters)



>mm_chr1_31508929_31509816
          Length = 888

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%), Gaps = 1/488 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggaaattatgcctttgttgaaactgcagaactctccttggaacagacaccatgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 actggaaattatgcctttgttgaaactgcagaactctccttggaacagacaccatgtttc 629

                                                                       
Query: 61  ttgacaggggaagccagccagggagcagagcaggcaagcaaggctggcagccagtgatct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttgacaggggaagccagccagggggcagagcaggcaagcaaggctggcagccagtgatct 569

                                                                       
Query: 121 tattgaatattgtttgccatagagagatacaggaggctgactgccccagaggattgctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tattgaatattgtttgccatagagagatacaggaggctgactgccccagaggattgctaa 509

                                                                       
Query: 181 caggcagcatatctaaaaagaaaattttctttgcagtgaaagagcaa-aaattctgatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 508 caggcagcatatctaaaaagaaaattttctttgcagtgaaagagcaagaaattctgatat 449

                                                                       
Query: 240 ctgaaaactactttttcccccagttgaaagaatgtcccgaaaaataagtcttccaagaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgaaaactactttttcccccagttgaaagaatgtcccgaaaaataagtcttccaagaag 389

                                                                       
Query: 300 acccaaattatcctgtgagaaataaaaagaagacagcacatcaccagtagaagatcaaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acccaaattatcctgtgagaaataaaaagaagacagcacatcaccagtagaagatcaaaa 329

                                                                       
Query: 360 taatctcggtggggaagagatatataaagctaagtaaataaggactattatgaatgtctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taatctcggtggggaagagatatataaagctaagtaaataaggactattatgaatgtctc 269

                                                                       
Query: 420 ctcatgaaatatagaaggtgaacaaatattattaacatgttgtcatataagggaatatca 479
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 268 ctcatgaaatatagaaggtgaacaaatattattaacatgtagtcatataagggaatatca 209

                   
Query: 480 tgaagcat 487
           ||||||||
Sbjct: 208 tgaagcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 888
Length adjustment: 10
Effective length of query: 477
Effective length of database: 878
Effective search space:   418806
Effective search space used:   418806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)